Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00577 ATGCTTCTTGTGGGTCTGTTTCTCATTCTTTTGTGTTGTTCTGATTGTCTTCTTCTTGTGAGTTCTTTGAATGATGAAGGGTTTGTGCTTTTGTCACTTAAGCAGTCCATTACTGTAGACCCAGATGGGGCTTTCAGCAATTGGGATTCTTCTGATGAAACCCCTTGTTCTTGGAATGGAATTGGTTGTGTAAAGGAAATTGTTGTTTCTGTTACCATTCCTAAGAGAAATTTGTATGGATTTCTTCCTTCTGCTCTTGGGGCTCTCTCTGGGCTTCGCCATTTGAATTTGAGGAACAATAGGCTTTATGGGACCTTGCCTTTTCAGCTTTTCTCAGCTCAAGCCCTTCAGAGCTTGGTTCTTTATGGGAATTCCTTTTCTGGGTCTGTTCCAAATGGGATTGGGAAGCTTATATACCTTCAAACTTTGGATTTGTCTCAAAATTTCTTCAATGGGTCATTACCCACTTCAATTATACAATGTAAGAGACTTAAAACCCTTGATGTTAGTCAGAATAACTTCACTGGTTCACTGCCACATGGGTTTGGAACTAGTTTTAGTTCTTTGGAGAAACTGGATCTTTCATTTAACTCCTTTGATGGTTCCCTTCCTAGTGATTTGGGGAATTTGTCTAGCTTACAGGGCACTGTTGACTTGTCTCATAATCTTTTTTCTGGTTCAATTCCAGCTAGCCTTGGAAACCTACCTGAAAAGGTTTACATTGATCTTAGCCATAACAATTTGAGTGGTCCAATACCCCAAAATGGTGCTCTGATGAACAGAGGACCCACTGCTTTTATTGGTAACCCTGGGCTCTGTGGTTCCCCATTGAAGAACACATGTTCTTCAGGAACTCTGAGTGCAAGCTCACCGTCATTGCTTCCGTTTCTCCCGGATGATCATTCGCGGGGGATTTCTGGTGACAATGCTGAGAAAACCAGGGGATTAAGTAAGAGTGCTGTTATTGCAATAGTACTTGGTGATGTGATTGGCATATGTTTAGTTGGGTTATTGTTCTCATATTGTTATTCTAGAGCTTGTAGTCCAAGGAGCAAAGACGAGATCGGGCATGGTTCCGATAAGGGGAAAGGAAGAAATGAGTGTTTATGCTTCAGGAAGGATGAATCTGAGTCGGTTTCACAGAATGTGGAGCAGTATGATCTTGTGCCGTTGGATGCACAAGTCGCATTTGATCTTGATGAACTTCTCAAGGCATCAGCCTTTGTTATTGGCAAAAGTGGGATTGGTATAGTGTACAAAGTGGTGCTTGAAGATGGAGTTACGTTGGCCGTGCGACGATTGGGGGAAGGCGGTTCGCAAAGATTCAAAGAATTTCAAACAGAAGTAGAAGCAATAGCAAAGCTAAGGCATCCTAATCTTGTCACTCTTAGAGCCTATTACTGGTCTGTTGATGAGAAGCTGCTCATTTATGATTTCATACCCAATGGAAACCTTGCCATTGCCATTCATGGAAAGCCAGGAATGGTATCTTTCACACCGTTATCCTGGTCTGCAAGGTTAAAGATCATGGAAGGAATTGCTAAAGGAATTGTTTATCTCCATGAATTCAGCCCCAAGAAGTATGTCCATGGAGATTTGAAACCCAACAACATTCTGCTCAGTCAGAACATGGAAGCCAAAATTTCTGACTTTGGCCTTGCTCGACTTGCGAATATTGCAGGAGGAACCCCAACCTTACAATCAAGTCGAGTGGCGTCTGAGAAACCGTTAGATCCAAAACAACCAAAAACCACAACATCCGAGATCATTTGCAGTTCATCTTCCAATACAGGAACTTGTTATCAAGCCCCTGAATCACTCAAAGTCTTAAAACCATCCCAAAAATGGGATGTTTACTCTTATGGTGTGATCTTACTTGAAATGATCACTGGAAGATTCCCAGTAATCCAAGTGAGTTCTTCCTCTGAAATGGATCTTGTCCATTGGATTCAACTCTGCATTGAAGAACAAAAGCCTCTTTCAGAAGTCATAGATCCATATCTAGTTCAAGATGCAGATAAAGAAGAAGAGTTCATCTCTGTACTCAAAATTGCTATGTCTTGTGTTCATGGAAGCCCTGAAAGGAGACCTACCATGAGGCACATCTCCGACGCCCTCGAAAGGCTATCGATTTCACCAACGTCGAAGAATTAA 2154 41.92 MLLVGLFLILLCCSDCLLLVSSLNDEGFVLLSLKQSITVDPDGAFSNWDSSDETPCSWNGIGCVKEIVVSVTIPKRNLYGFLPSALGALSGLRHLNLRNNRLYGTLPFQLFSAQALQSLVLYGNSFSGSVPNGIGKLIYLQTLDLSQNFFNGSLPTSIIQCKRLKTLDVSQNNFTGSLPHGFGTSFSSLEKLDLSFNSFDGSLPSDLGNLSSLQGTVDLSHNLFSGSIPASLGNLPEKVYIDLSHNNLSGPIPQNGALMNRGPTAFIGNPGLCGSPLKNTCSSGTLSASSPSLLPFLPDDHSRGISGDNAEKTRGLSKSAVIAIVLGDVIGICLVGLLFSYCYSRACSPRSKDEIGHGSDKGKGRNECLCFRKDESESVSQNVEQYDLVPLDAQVAFDLDELLKASAFVIGKSGIGIVYKVVLEDGVTLAVRRLGEGGSQRFKEFQTEVEAIAKLRHPNLVTLRAYYWSVDEKLLIYDFIPNGNLAIAIHGKPGMVSFTPLSWSARLKIMEGIAKGIVYLHEFSPKKYVHGDLKPNNILLSQNMEAKISDFGLARLANIAGGTPTLQSSRVASEKPLDPKQPKTTTSEIICSSSSNTGTCYQAPESLKVLKPSQKWDVYSYGVILLEMITGRFPVIQVSSSSEMDLVHWIQLCIEEQKPLSEVIDPYLVQDADKEEEFISVLKIAMSCVHGSPERRPTMRHISDALERLSISPTSKN 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6507054 6509602 + ClCG01G005910.1 Cla01g00577 264166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00577 717 SMART serkin_6 408 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00577 717 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 6 712 - -
Cla01g00577 717 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Cla01g00577 717 ProSiteProfiles Protein kinase domain profile. 404 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00577 717 Pfam Protein kinase domain 410 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00577 717 CDD STKc_IRAK 410 709 - -
Cla01g00577 717 SUPERFAMILY L domain-like 24 278 - -
Cla01g00577 717 Gene3D Phosphorylase Kinase; domain 1 372 479 - -
Cla01g00577 717 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 6 712 - -
Cla01g00577 717 Gene3D Ribonuclease Inhibitor 23 184 IPR032675 -
Cla01g00577 717 ProSitePatterns Serine/Threonine protein kinases active-site signature. 528 540 IPR008271 GO:0004672|GO:0006468
Cla01g00577 717 SUPERFAMILY Protein kinase-like (PK-like) 409 707 IPR011009 -
Cla01g00577 717 MobiDBLite consensus disorder prediction 566 589 - -
Cla01g00577 717 Pfam Leucine Rich Repeat 188 210 IPR001611 GO:0005515
Cla01g00577 717 Gene3D Ribonuclease Inhibitor 186 279 IPR032675 -
Cla01g00577 717 Gene3D Transferase(Phosphotransferase) domain 1 480 716 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g00577 Cla05g02275 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00577 Cla-Chr1:6507054 Cla05g01097 Cla-Chr5:11361460 1.15E-127 dispersed
Cla02g00787 Cla-Chr2:10077419 Cla01g00577 Cla-Chr1:6507054 3.47E-142 transposed
Cla04g00044 Cla-Chr4:1331851 Cla01g00577 Cla-Chr1:6507054 8.73E-142 transposed
Cla11g00735 Cla-Chr11:10497198 Cla01g00577 Cla-Chr1:6507054 0 transposed
Cla11g01352 Cla-Chr11:26999967 Cla01g00577 Cla-Chr1:6507054 0 transposed
Cla01g00577 Cla-Chr1:6507054 Cla05g02275 Cla-Chr5:34394583 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80244 PF00069 Pkinase 4.60E-34 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00577 - - csv:101203259 1279.62