Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00580 ATGTCCCCTTCGAAGTTTTTGCTCCTGTTAGTGCAATGTGTTGCCTATTCAACCCCCCTTTTTTGCCTCCTTCTTGTTCAAATCCCTTTTGGAAGCTCACAAATACTATCTCTGTGGGTAATGGAGGAAATGGGTTATTGGGTCACTGATTCTCTCCCTAGCTTTGCTAAAAATCTCCATATCTTGCTGGTGGATCATGACCCCTTCTCTCTCAAGCACTTGGCTTCATTGCTTGAGCAACAGTCTTACAATGTTACCACCACTCAACTAGCATCTACTGCTCTATCAATGATTCAGGAAAAAGGTGACCGGTTCGACCTTGTCATGGCTAACGTTAGCATGCCTGATATGGACAGTTTTTCGTTTTTGCACGTGCTCCTTAAGATGAATATTGCTGTCATTTTTATGTCCTCGGGGATGAACTTGAGTGTGGCTACGAAAGCATTGGCAGAAGGAGCATGCTATTTTCTTCAGAAACCTATTTCCAAGGATGATCTCAAATATGTGTGGCAACACGTGTATCGATGGAACAGAAACATAACCAAACAAACCCAAAAAGCAAAATGTATGGAAAAAGCCAAACCTAGAAAGGAATCTGTAGGTATCCAAATTGCGGACGCTGTTGTTTTGTCTCGGTCTGGCGCTGCAGTTAGTTATAATAATAATTGTTGCATTAATTATAAACCTATGAACTATAAAGAAACAGAGAAGAGTAAGCAAATCGTATCACATGATAGCCTGGCTGGGTCTTACTTTGGAGGAAAGAGATTAACTGATGACATAGAAGGAATAAACAGGGAAAAGAGAGTTAAATATTATTCCGAACCTACCAAGTTTGGATTTTCAAGAATTGATGAGGATCGTGAAAGAAGGAAGGAATATTATATTGCCAGTGATAGCAGATCACGTGTCGTCTGGAATGCAGAACGACGTCGGAAGTTCACAGATGCCCTTAACAAGCTAGGTGATAAATCTCGTCCAAAACTTATACTGAAGATGATGAATGAACCATGTTTGACCCTGCGCCAGGTTGCGAACCACCTGCAGAAATACAAAGCTCAAGTAGAATGCATCAAAAGGAGGAGAGAAAATAAATTACCTAATAGGAGGGAAGCATCCAAATGCGATTTCTCAGTCAGGACTCAACTTCCCCCGCTGCTGCAGCAGCACCATGAGACAAGCAGATTTTCAAATGTAGGTCTGACCTCTGGTTTGGGGGGTGAAAGATTCCAACTTATAGCGCCTAAAAGTCAGCATAGTCCTAGATTGCCTGTTAGCGACTTTGTAAATTGCGATCTGAAAATGCTTCACCACAATTTTCAGCATGTCAGCTCAAACTACGATTCAGTTTCATATGACATCAATAAGGAAGTTGGAATATGCCCTGATAATATTCAAACATTTCAAAAGGTAGGGAGTGCTTTTCCCACTGACAATTGTGGGAAGTTTGCTCTCATAGGAGGGGGTGTTCAAACATCTGAGTTAAACTTCTCAAATGTATCTAAAATGACTTCAGAGGTAGCTTCTTCTGTATTTGATGAAACTCAATTCCCAAACAATCTTCTTGATGGTGTAATTCATCAGCTAGATTTGACTGCTTTCAAAATTGAAAACCAAGAAGCATTGGAATGTAGTGGTACATCTGAAGAGACCCAGTCAATGTCAAGGGACATAGCTATACTCGATTCAATCAACTTGGACAATGTTGTTGAGGTGGGACAGGAACTTCCTGCAGCTTCTGAAAGTCAAGGAAGCCAACAATTAGCAGAATATGCATATCTATTAGATGTATTAGAAGATGATCCGTACGACTTTGTTGGTGACTTGAATCTGAGTGATGTTGATAAATACAGTGAATGGCTGAGGAACACTGTACTCGAAAACAGAAACGGTCCAGACAGTTTTATCACTGACAATGCAGAGAACTTTCCAGTTGAAGACACTCGATAA 1950 40.72 MSPSKFLLLLVQCVAYSTPLFCLLLVQIPFGSSQILSLWVMEEMGYWVTDSLPSFAKNLHILLVDHDPFSLKHLASLLEQQSYNVTTTQLASTALSMIQEKGDRFDLVMANVSMPDMDSFSFLHVLLKMNIAVIFMSSGMNLSVATKALAEGACYFLQKPISKDDLKYVWQHVYRWNRNITKQTQKAKCMEKAKPRKESVGIQIADAVVLSRSGAAVSYNNNCCINYKPMNYKETEKSKQIVSHDSLAGSYFGGKRLTDDIEGINREKRVKYYSEPTKFGFSRIDEDRERRKEYYIASDSRSRVVWNAERRRKFTDALNKLGDKSRPKLILKMMNEPCLTLRQVANHLQKYKAQVECIKRRRENKLPNRREASKCDFSVRTQLPPLLQQHHETSRFSNVGLTSGLGGERFQLIAPKSQHSPRLPVSDFVNCDLKMLHHNFQHVSSNYDSVSYDINKEVGICPDNIQTFQKVGSAFPTDNCGKFALIGGGVQTSELNFSNVSKMTSEVASSVFDETQFPNNLLDGVIHQLDLTAFKIENQEALECSGTSEETQSMSRDIAILDSINLDNVVEVGQELPAASESQGSQQLAEYAYLLDVLEDDPYDFVGDLNLSDVDKYSEWLRNTVLENRNGPDSFITDNAENFPVEDTR 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6534986 6540621 - ClCG01G005950.2 Cla01g00580 264169

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00580 649 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR11-LIKE 55 640 - -
Cla01g00580 649 SMART REC_2 59 170 IPR001789 GO:0000160
Cla01g00580 649 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 302 353 IPR006447 GO:0003677
Cla01g00580 649 Gene3D - 298 358 - -
Cla01g00580 649 CDD REC_typeB_ARR-like 61 174 - -
Cla01g00580 649 SUPERFAMILY Homeodomain-like 300 354 IPR009057 -
Cla01g00580 649 PANTHER TWO-COMPONENT RESPONSE REGULATOR 55 640 IPR045279 GO:0009736
Cla01g00580 649 SUPERFAMILY CheY-like 57 183 IPR011006 -
Cla01g00580 649 ProSiteProfiles Response regulatory domain profile. 60 174 IPR001789 GO:0000160
Cla01g00580 649 Coils Coil 341 361 - -
Cla01g00580 649 Gene3D - 58 195 - -
Cla01g00580 649 Pfam Response regulator receiver domain 61 167 IPR001789 GO:0000160
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00580 - - - bhj:120067959 1102.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00580 Cla-Chr1:6534986 Cla06g01213 Cla-Chr6:25304932 4.09E-34 dispersed
Cla01g00580 Cla-Chr1:6534986 Cla05g02268 Cla-Chr5:34338331 1.37E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g367 . . . . . . . . . . . Cma04g00061 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma04g02080 . . . . . . . . . . . . Cla01g00580 Cam01g0607 Cec01g0597 Cco01g0621 Clacu01g0599 Cmu01g0572 Cre09g1935 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002835 0 8 0 0 0 1 3 1 1 1 1 1 2 1 1 5 1 0 0 1 1 7 3 1 1 1 2 8 2 0 54
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60372 PF00072 Response_reg 7.20E-16 CL0304 Cla TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00580 Cla_Chr01 FPKM 0.128571 0.0 0.439035 0.207715 0.0 0.26935 0.62327 1.144666 0.118956 0.487195