Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla01g00581 | ATGGAAAGCAATCGACAACTGTCTGTGGATCTTGAAATGCACAAAAGCACCACTTCTGCGTCGAATACCATTGCTGCTGCGACCACTATGTCATCGTCGTCGCAGCTCAAGTCGCAGCTTCAAACAAACGATGTTTATGCTTCCCTCTATAATTCACCAATCTTTGCTCCAAAGCAATCCGTGCCGGTATCTCTTCCATTGACTCTCTATGGTGACTCGACTCACGCGGATTCAACCTCCTCTTCAAAAACGATAAGCAGCCACCTCTATCAAACCCGCGTCGTACAAGATCACCAGGAAATGGTCAATCGTCATAGCCTCTGTCTCACTCATCTTCGAGAAGCAACCGAAGAAGCCGATGCTCTTCGGCAAGAGAATATCCACCTCAGAAGTATTAATCACGAGCTTAGCAAACACCTCAGCCTCCTGATCCACGCTTCGGTTCAGAAACAGTACGGCTCCTCTGATCAAGCTCCTCCGTTTAATTTTGTGGAAGGATTCCGCGGACTCAGTGTATCAGAGAAGGGAGCAAGCAGTTCGGCATGGGAGGATATTTCCGATGAGAGTCCGACGAGCGTAATGGAGGGCGGAAGGGTAGAGGGCGTTGAGGTGGAGAGATTTTCGCTCCCAAAGAGCATCTCCGTGAGGTCCAATGGATACCTGAAGATGGCACAAGCCGGCACCAGCCAGGGCGGAAAGGTCCGCGCCTCATCTCGGCCCAGAACTGCAAGTCCCGTCAAAGTTACGCAGAAGGTGTACGTGCAAGGAGTGAAAGAAGAGGAAAAGCCACTGGAATTAGAGGTGTACAACCAGGGCATGTTCAAAACCGAGCTCTGCAACAAATGGCAAGAAACGGGCAGCTGCCCCTATGGAGACCACTGCCAATTCGCCCATGGAATAGAGGAGCTCCGCCCTGTGATCCGCCACCCCCGCTACAAGACGGAGGTCTGCCGGATGGTCCTCGCCGGAGTCGTCTGCCCTTACGGTCACCGCTGCCACTTTCGTCATGCACTCACTGACCAGGAAAGGCTCATGGGAACACTCAAGCCCACCTGCAGGACCACCACCCCCAAGCTCGACAGGTGA | 1086 | 52.95 | MESNRQLSVDLEMHKSTTSASNTIAAATTMSSSSQLKSQLQTNDVYASLYNSPIFAPKQSVPVSLPLTLYGDSTHADSTSSSKTISSHLYQTRVVQDHQEMVNRHSLCLTHLREATEEADALRQENIHLRSINHELSKHLSLLIHASVQKQYGSSDQAPPFNFVEGFRGLSVSEKGASSSAWEDISDESPTSVMEGGRVEGVEVERFSLPKSISVRSNGYLKMAQAGTSQGGKVRASSRPRTASPVKVTQKVYVQGVKEEEKPLELEVYNQGMFKTELCNKWQETGSCPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTDQERLMGTLKPTCRTTTPKLDR | 361 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 6550969 | 6554142 | + | ClCG01G005960.1 | Cla01g00581 | 264170 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla01g00581 | 361 | SUPERFAMILY | CCCH zinc finger | 307 | 341 | IPR036855 | GO:0046872 | |
| Cla01g00581 | 361 | SUPERFAMILY | CCCH zinc finger | 270 | 305 | IPR036855 | GO:0046872 | |
| Cla01g00581 | 361 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 274 | 299 | IPR000571 | GO:0046872 | |
| Cla01g00581 | 361 | Gene3D | - | 307 | 343 | - | - | |
| Cla01g00581 | 361 | Gene3D | - | 267 | 306 | - | - | |
| Cla01g00581 | 361 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 | 63 | 350 | - | - | |
| Cla01g00581 | 361 | ProSiteProfiles | Zinc finger C3H1-type profile. | 311 | 339 | IPR000571 | GO:0046872 | |
| Cla01g00581 | 361 | SMART | c3hfinal6 | 273 | 300 | IPR000571 | GO:0046872 | |
| Cla01g00581 | 361 | SMART | c3hfinal6 | 311 | 338 | IPR000571 | GO:0046872 | |
| Cla01g00581 | 361 | Coils | Coil | 112 | 132 | - | - | |
| Cla01g00581 | 361 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 63 | 350 | IPR045877 | GO:0003729 | |
| Cla01g00581 | 361 | ProSiteProfiles | Zinc finger C3H1-type profile. | 273 | 301 | IPR000571 | GO:0046872 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla01g00581 | Cla-Chr1:6550969 | Cla11g00727 | Cla-Chr11:10342885 | 2.61E-65 | dispersed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 60373 | PF00642 | zf-CCCH | 5.60E-12 | CL0537 | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla01g00581 | K18753 | - | csv:101203274 | 623.239 |