Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00585 ATGTTAAAAATCATCGACAAGGACCGTTTGGCAGTTCATCACTTGCATCGCCACACACTTGCCCCTGGCGGAATTCCCAATACAAAACGGATTCGCTTTCACATTATAAAAGTACCAATTTTGGTCAATCGCGCGCACGCCGATCAATTCACCAACCCACCCCCAACTACGATTACGAACGAACCCAACTTTTTGTTTTTGTCTTTTTGCTTCCCAACTACTCCCACAATAAAATCAACCCCAAACCCAATTCGATTCTGTTGGATTGCCCACCAATCTTTCTCTCAGAGGCGCGGATCGTCTTCCAGTCGACGTCTTTCTGTTCCGATCCGTGCTGGGGCTTACTCCGATGAGCTTGTTCAGACCGCGAAATCAGTTGCATCACCCGGACGTGGTATTCTTGCCATTGATGAATCTAATGCAACATGTGGGAAGAGGTTAGCATCCATTGGCTTGGACAATATTGAAACCAACAGACAAGCTTACAGACAGCTTTTGCTGACTACACCTGGCTTGGGCGAGTACATATCGGGTGCTATTCTTTTTGAGGAAACACTCTACCAATCAACCACAGATGGAAAGAAATTTGTCGATTGCTTGCGGGAGGCAAAAATTATGCCTGGCATTAAAGTTGACAAGGGTTTGGTTCCTTTGCCAGGATCCAACAATGAGTCTTGGTGTCAAGGCCTAGACGGACTGGCCTCAAGATCCGCTGAATATTATAAGCAAGGCGCTCGTTTTGCTAACATGTTCTTCGTGAATCTGGGTAGAGTATTAACATGCGGAGTTTACTGTTTTTCTTGGAAATTGTTTTTGAAAGAACAAAGGCCCTCTTATATGGGGTGGTTTTCTCCTCTAGCATTTATTTCTGGGCGGACAGTCGTTAGCATTCCTTGTGGTCCTTCTGCTCTGGCTGTTAAGGAAGCTGCTTGGGGCCTTGCACGATATGCTGCCATTTCTCAGGACAATGGCCTTGTACCAATTGTAGAACCTGAGATCCTTCTTGATGGGGACCATTCCATTGACAGAACACTTGAAGTGGCTGAAAAGGTCTGGTCAGAAGTATTCTTCTATTTGGCTGAAAACAATGTTCTGTTTGAAGGAATCCTTCTAAAGCCTAGCATGGTAACACCCGGGGCCGAGCACAAGGAGAAGGCCTCTCCTGAAACTATTGCCAAATACACATTAAAGATGCTCAGGAGAAGAGTTCCTCCTGCAGTTCCTGGAATCATGTTTTTGTCTGGAGGGCAGTCTGAAGTGGAAGCCACATTGAACCTGAATGCCATGAACCAAAGTCCCAACCCCTGGCATGTATCCTTCTCTTATGCCCGTGCGTTGCAGAACACCGTGCTCAAGACATGGCAAGGACACCCCGAAAACGTGGAGGCTGCACAGAAAGCACTTCTGGTGCGTGCAAAGGCAAACTCCCTTGCTCAGCTCGGTAAGTACTCTGCTGAGGGTGAAAGTGACGATGCCAAGACAGGAATGTTTGTGAAGGGATATACTTACTGA 1512 46.69 MLKIIDKDRLAVHHLHRHTLAPGGIPNTKRIRFHIIKVPILVNRAHADQFTNPPPTTITNEPNFLFLSFCFPTTPTIKSTPNPIRFCWIAHQSFSQRRGSSSSRRLSVPIRAGAYSDELVQTAKSVASPGRGILAIDESNATCGKRLASIGLDNIETNRQAYRQLLLTTPGLGEYISGAILFEETLYQSTTDGKKFVDCLREAKIMPGIKVDKGLVPLPGSNNESWCQGLDGLASRSAEYYKQGARFANMFFVNLGRVLTCGVYCFSWKLFLKEQRPSYMGWFSPLAFISGRTVVSIPCGPSALAVKEAAWGLARYAAISQDNGLVPIVEPEILLDGDHSIDRTLEVAEKVWSEVFFYLAENNVLFEGILLKPSMVTPGAEHKEKASPETIAKYTLKMLRRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQSPNPWHVSFSYARALQNTVLKTWQGHPENVEAAQKALLVRAKANSLAQLGKYSAEGESDDAKTGMFVKGYTY 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6631140 6635398 + ClCG01G005990.2 Cla01g00585 264174

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00585 503 Gene3D Aldolase class I 285 503 IPR013785 -
Cla01g00585 503 ProSitePatterns Fructose-bisphosphate aldolase class-I active site. 364 374 IPR029768 -
Cla01g00585 503 SUPERFAMILY Aldolase 109 251 - -
Cla01g00585 503 PANTHER FRUCTOSE-BISPHOSPHATE ALDOLASE 288 503 - -
Cla01g00585 503 PANTHER FRUCTOSE-BISPHOSPHATE ALDOLASE 288 503 IPR000741 GO:0004332|GO:0006096
Cla01g00585 503 SUPERFAMILY Aldolase 291 503 - -
Cla01g00585 503 PANTHER FRUCTOSE-BISPHOSPHATE ALDOLASE 102 251 IPR000741 GO:0004332|GO:0006096
Cla01g00585 503 Pfam Fructose-bisphosphate aldolase class-I 118 249 IPR000741 GO:0004332|GO:0006096
Cla01g00585 503 Pfam Fructose-bisphosphate aldolase class-I 288 503 IPR000741 GO:0004332|GO:0006096
Cla01g00585 503 CDD FBP_aldolase_I_a 116 483 - -
Cla01g00585 503 Gene3D Aldolase class I 104 254 IPR013785 -
Cla01g00585 503 PANTHER FRUCTOSE-BISPHOSPHATE ALDOLASE 102 251 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00585 K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] - csv:101218080 689.108
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00585 Cla-Chr1:6631140 Cla11g00366 Cla-Chr11:4099815 0 dispersed
Cla01g00585 Cla-Chr1:6631140 Cla10g01832 Cla-Chr10:34292660 9.82E-133 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g378 . . . Bda11g00154 Bpe13g01045 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0799 Cone6ag0419 Cone9ag0443 . Csa05g02050 . . . . . Bda11g00154 . . . Bma06g01095 . Cmo04g02185 . Cma04g02084 . Car04g02023 . Cpe13g00387 . Bhi12g00859 . . . Hepe02g2683 . Lcy10g1461 Cla01g00585 Cam01g0611 Cec01g0602 Cco01g0627 Clacu01g0603 Cmu01g0576 Cre09g1929 Lsi09g00634 . Chy09g00880 Cme09g01414
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001279 3 2 2 3 3 2 4 2 2 2 2 2 3 2 2 4 2 6 3 2 2 3 2 1 2 2 2 4 2 3 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00585 Cla_Chr01 FPKM 8.9375 9.869723 7.129994 7.168391 9.922018 9.32588 10.263138 9.940618 9.856082 11.029211