Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00591 ATGGCTGTTTTTCCTATCAACTCATCCAACTTGGATCTCTCCATTTCCATGCCGGGCTTTGCTTCTTCATCGACTCGTCCTCCGCTAATGAAAGTGAGAATTTGTGTAGTGAGAGAATTGGACATGAACCGAGTACCGACGAGAGGAGAAGCAGAAGAAGAATGGGCGGTGGCACCGAGCGCGGAGGAAGAGGAAGAAGAAAGTTGCATTAATAATGGAGGTACTAAGCCAAGGAAGAAGCTTCGCCTGTCAAAAGATCAGTCTCGTCTTCTTGAAGAAAGCTTTAGGCTCAATCATACATTAAACCCTAAGCAAAAGGAAGCATTGGCCATGGAGTTGAAGCTGAAGCCAAGACAAGTTGAAGTTTGGTTTCAGAATCGTAGGGCCAGGAGCAAATTGAAGCAAACTGAGATGGAATGCGAGTATTTGAAGAGATGGTTTGGATCATTAACAGAGCAAAACCATCGGTTGCAGCGGGAACTGGAGGCGCTGAGAGCTATCAAGGTTGCTCCATCGGCCATCGTCTCATGCCACGACCGACAGCCGCCCCTCTCGACGTCTACTATAACCATGTGTCCCCGGTGTGAGCGTATAACATCTAGTAAGGCCGCAATCGCCGCCGCAACAAAGCCATCAAAGGTGGTTACATCCACCCTGAAATTGCATCAGCCGTCGCGAGCTTGTTGA 687 48.62 MAVFPINSSNLDLSISMPGFASSSTRPPLMKVRICVVRELDMNRVPTRGEAEEEWAVAPSAEEEEEESCINNGGTKPRKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNHRLQRELEALRAIKVAPSAIVSCHDRQPPLSTSTITMCPRCERITSSKAAIAAATKPSKVVTSTLKLHQPSRAC 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6708914 6712294 + ClCG01G006050.2 Cla01g00591 264180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00591 228 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 1 209 - -
Cla01g00591 228 ProSiteProfiles 'Homeobox' domain profile. 74 134 IPR001356 GO:0003677
Cla01g00591 228 PANTHER - 1 209 - -
Cla01g00591 228 Gene3D - 71 141 - -
Cla01g00591 228 SMART halz 134 177 IPR003106 GO:0006355|GO:0043565
Cla01g00591 228 Coils Coil 147 167 - -
Cla01g00591 228 SMART HOX_1 76 138 IPR001356 GO:0003677
Cla01g00591 228 MobiDBLite consensus disorder prediction 58 79 - -
Cla01g00591 228 CDD homeodomain 77 135 IPR001356 GO:0003677
Cla01g00591 228 Pfam Homeobox associated leucine zipper 134 166 IPR003106 GO:0006355|GO:0043565
Cla01g00591 228 SUPERFAMILY Homeodomain-like 66 135 IPR009057 -
Cla01g00591 228 Pfam Homeodomain 78 132 IPR001356 GO:0003677
Cla01g00591 228 ProSitePatterns 'Homeobox' domain signature. 109 132 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00591 Cla-Chr1:6708914 Cla07g00648 Cla-Chr7:12977733 3.35E-78 dispersed
Cla01g00591 Cla-Chr1:6708914 Cla09g00345 Cla-Chr9:3389307 2.17E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60374 PF00046 Homeodomain 1.00E-16 CL0123 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00591 K09338 - csv:101206325 295.434