Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00596 ATGACCAAAGAGGAAGATTTTAAGCTACTAAAGTTTCAGACTTGTGATCTCAGAGTGAACATTCACTGTGATGGGTGTAGGCAGAAAGTCAAGAAACTTCTTCAGAGGATAGAAGGAGTGTTTCAGGTTGCCATAGGTGCAGAGAATCAAAAGGTTACCGTTTTAGGAAATGTGGATCCTGCAACTTTGATCAATAAGTTGGTGAGAGCTGGAAAACATGCTGAGCTTTGGTCACAGAAAGCAAACACGAGCCCGAAACCGAAGAACAAAGACGATAAGACTCCGAACAAGGAACCAAAGCATCTCAAACTGACCTCATTCAACTGTGAAGATGACGACATTGTTGATTGTGTTGAGGAAGGAGAAGATTATGAAGCTGCACAACTTCAGTTCAGAGCAGCTAATCTTGATCTCCTTAGGCAGCAAGCAATCGAAGCGAACAATGCTGGGAAAGGCATTGGGATCAACCGAATTCCCGGGCTAAATGGCAAGATGAACAACAACATCAACATCAACAACAAACCTGGGAATGGAAAGAAAATAGACCCTAATCAGCCAATGGCAATAAAAAACACCCCATCTGAGATTGACCGAAAAACTTTGGCAGCTCTGAAGATGAACAATGCTCAACTATTCGGTAACGGCCGAGAAAGTATCAATCTCGGGGAAGCAAAAAGAGCAAACAACAACGATTTGAGTTCAATGATGAGCATGGCAGGGTTCAACGGTGGCAACCTTTTGAATTTTGCCACTCCGTCTTCCATTGATGTCAATTCAACAAACACCTCTCAAGGACTTCACCTCCAACAGAACAATGGCTATGGCTATGGCTACCAGCCATCATCAACCTCTGGATTCTCCATGGCAACTGGTCAATATCATCATCAACAACAACAACAACAACAACAACAACAACAACAACAACCAACCTTCATCAATGGCTACAATCAATACCATCAGCAGCAACCATTGATGAACATGAACAACATGGTAAATAGACAAGCAATGAACCAGCAGCCTCAAATGATGTACAATAGAGCTCAATTGGTTCCACCAAACACAGGATATTACTTCAATTACAATCCAAGCCCTGTTCATCCAAGTTATCCTTATGTTCATGGCCACAATAGTAACTCTGCAGCTGAGATGTTCAGTGATGAGAACACAAGCAGCAGTTGCTCAATCATAAATCAGACTTTGATGTCTTGGTGTAAGGTAAGAAAAATCCGCGGCATTTTCATTTTTCATATGGTACCGCCAGAAATGTCCCTTCATCTCACTTATCCACTCCCGATATTCCCTCGCCAGAATGGCCTCCGGACCAAATCTCAGCCATCGCCCCCGAAGTCGATCGTCTCCTGCTCCGCTCTCAAACGCTACACCGCTGGATGTAAAAGGCAGTATACGAGTGTGATGATAGTTCCGACTGGCGTAGGCGCAGCCATTGGTGGATACGCAGGCGACGCTCTCCCGGTTGCTCGTGCCCTCGCCTCCGTCGTTGATTGCCTTATTACTCACCCTAATGTGCTAAATGCAGCAATGCTTTACTGGCCGATGCATAATGTGCTTTATGTTGAAGGCTATGCACTAGATCGGTTTGCAGAAGGTTCATGGGCCCTAGAGCCTGTTCACCAGAATCGGGTAGGATTGGTTCTTGATGCTGCAATGGAGGAAGAGCTTCGAATTCGTCACTTGCAAGTGGCTGATGCTGCTAGAGCTTCTCTTGGATTGCCCGTGATGGAATATGTTGTCACAGATACACCTCTAATGGTAGAGAAGTGGATTGATCCAAAAACTGGGCAATCAACTGGGAGGATAAGACATCCTGCCTCACTGCTTAGAGCCGTGCAGACATTAATGAACCGGTCGAAGGTGAATGCGGTTGCAGTTGTTGGACGATTCCCAGACGACGATGATGAAGAGACAGACAATTATCGACAAGGGATGGGAGTTGATACTTTGGCAGGGGTTGAGGCTATTATTAGCCATCTTGTGGTGAAGGAGTTTCAGATTCCATGTGCTCATGCTCCTGCTTTGTCACCTACTCCCTTATGCACATCTCTATCTCCAAAATCAGCAGCAGAGGAGTTAGGATTCACATTCTTACCATGTGTACTTTCTGGGCTAAGTAATGCGCCTCAATACTTGAGCAAGAATTCTCAATCATTGGGGAAGGACTGCATATTGGCAGATGATGTTGATAGTGTCATTGTACCTATAAATGCATGTGGAGGGGATGGCACTCTTGCTTTTGCCAGAAGCAAACAGTTCAAGCCACTTATTATTGCGGTCGAGGAAAATGAAACAGTTCTCAGCGATTCTCCAGAGTCACTTGGGATTGAGGCGGTAAAAGTCTCAAATTATTGGGAAGCCATAGGTGTTGTTGCAGCTCACAAGGCAGGAATAGATCCTTATTCCCTTCGAAGAAATAGGATCAACAACATTAATTGCATTTCCAGTACATCTCCTAATGGCCACGCAGTCTCAAGTGCCCCCCCGACAATTCAACTGAGCTATCTGCAGGATCTGTTGAATTCACCTACAAAAGTTGTTTATACATATTCAACACCTATTTACCAGGGAGGTCGATCGCCGGCGCCGGAGACCGGAAGCAGGGAGAATTTTGAGGCATTGAATGATGATGGGTCTTCTTGTTCGTCTTCTTGGTTGGATTGCCTTTCGGAAGTGGTCGGAGCAATTCAGGCGGCGAAGCGGCTTCTGTACACGGCTTTGACTTTCTCTGTGTGCGACGAGGAGGGCTGTGCGACTTCAACGGAGGGAGCTACTAAAAAATTGGTTCTACAATTCCAATACGTGACAACAAGATTGGAAACTGCACTCTCAAATCTGCCATACGAACACTTTTGTGTCTCAGATGAAGTACAAGAACAGGTTGATTTGGTTAGAGCTCAACTGAGGAGAGCATCAAACAAGTACGAATCTATGTCTAACCCTAAAGAAAAGAAGCTTCAAGCTAGGTCAGGTTCTGTAAAATGGATGATCAGTAATGATGTCAAGAGCATGTCTAGTGTTGATGATGGAGATGTCGAGTCTCAGCATCATCGTCCTCGGAACCGCGACCACTTGACTAGTTTCGATTCGTTGAATTCTTGCTTTGATGATTGTTCAAGTGTTGTTCATTCTGATATGGAAGATGTTATAGCAAGCAAGAGCCAAGATGAGGTTAAAAAGCCTGTTGAAATTGAAATTCCTGAAAACTTCCTATGCCCCATTTCCTTTGAGTTGATGTTGAATCCCGTCATTGTCTCTACGGGACAGACATATGAAAGATCCAACATACAGAATTGGATAGACAGAGGAAATAGAATATGTCCAAAAACTCAAGAGCAGCTCCAATCTCTGATCCTCACTCCAAATTTTGTTATGAGAAAATTGATCTCTGAATGGTGTGAAGAGCATAATGTGAAGCTAGAGGAAGGATTAACCAACAGGAAACTTAAGAAGTATAGATCATTTGAGGACGATTGCCAAAGGACTGTGTCGATCAAAACTCTGGTTCGACACCTTTCATTCGGGTCGATTCAGGAGCAGAAGATCGCCGTGACCGAGATTCGAAAGCTATCAAAAAGTAGCTCAGATCATAGAGTTGAAATAGCAGAAGCAGGAGCAATCCCACAACTGGTTAACCTTTTAACTTCAAAGGATGTTGCAACACAAGAGAATGCAATTTCTTGCATTCTCAACCTTTCACTTCAAGAGCAAAACAAAAGACTTATTATGCTTTCTGGTGCTGTTTCTTACATTTCGCAAGTCCTCAAAGTTGGGAGCATGGAAGGGAGAGAGTGTGCCGCTGCAACAATTTACAGCTTGTCATTAGCCGATGAGAACAAGGCGATAATTGGGGCTTCCGGAGTGATCTCGGACCTGTTAGAAATCCTCGAGATCGGTAGTCCGAGAGGGCAAAAAGATGCTGCAGGAGCTCTATTGAATTTGTGTATGCACCAAGGGAATAAGGGCAGGGCTTTGAAGGTTGGGATTGTCAAACCATTGTTGAAAATGCTCTCTGATTCAAATGGTTCTTTGGTTGATGATGCTCTCTATATAATGTCGGTACTTTGCGGCCATCCAGAGGCGAAGGCTACGATGTCGAATGCGAATTCACTACTTGTTTTGACTGACATTCTGAAGACGGGGTCGCCTCGCAGCAAGGAAAATGCAGCTGCTGTTCTGCTTGCATTATGCAAGGGAGATTGGGAGAAGCTGGAATGGTTAACCAGACTTGGCGTGGTGGTGTCGTTGATGAAACTTGCCAATAATGGCACGGCGAGAGCGAGGCGAAAGGCTGCTTTATTGTTGGACCAACTCGGAAAATCATGA 4338 44.56 MTKEEDFKLLKFQTCDLRVNIHCDGCRQKVKKLLQRIEGVFQVAIGAENQKVTVLGNVDPATLINKLVRAGKHAELWSQKANTSPKPKNKDDKTPNKEPKHLKLTSFNCEDDDIVDCVEEGEDYEAAQLQFRAANLDLLRQQAIEANNAGKGIGINRIPGLNGKMNNNININNKPGNGKKIDPNQPMAIKNTPSEIDRKTLAALKMNNAQLFGNGRESINLGEAKRANNNDLSSMMSMAGFNGGNLLNFATPSSIDVNSTNTSQGLHLQQNNGYGYGYQPSSTSGFSMATGQYHHQQQQQQQQQQQQQPTFINGYNQYHQQQPLMNMNNMVNRQAMNQQPQMMYNRAQLVPPNTGYYFNYNPSPVHPSYPYVHGHNSNSAAEMFSDENTSSSCSIINQTLMSWCKVRKIRGIFIFHMVPPEMSLHLTYPLPIFPRQNGLRTKSQPSPPKSIVSCSALKRYTAGCKRQYTSVMIVPTGVGAAIGGYAGDALPVARALASVVDCLITHPNVLNAAMLYWPMHNVLYVEGYALDRFAEGSWALEPVHQNRVGLVLDAAMEEELRIRHLQVADAARASLGLPVMEYVVTDTPLMVEKWIDPKTGQSTGRIRHPASLLRAVQTLMNRSKVNAVAVVGRFPDDDDEETDNYRQGMGVDTLAGVEAIISHLVVKEFQIPCAHAPALSPTPLCTSLSPKSAAEELGFTFLPCVLSGLSNAPQYLSKNSQSLGKDCILADDVDSVIVPINACGGDGTLAFARSKQFKPLIIAVEENETVLSDSPESLGIEAVKVSNYWEAIGVVAAHKAGIDPYSLRRNRINNINCISSTSPNGHAVSSAPPTIQLSYLQDLLNSPTKVVYTYSTPIYQGGRSPAPETGSRENFEALNDDGSSCSSSWLDCLSEVVGAIQAAKRLLYTALTFSVCDEEGCATSTEGATKKLVLQFQYVTTRLETALSNLPYEHFCVSDEVQEQVDLVRAQLRRASNKYESMSNPKEKKLQARSGSVKWMISNDVKSMSSVDDGDVESQHHRPRNRDHLTSFDSLNSCFDDCSSVVHSDMEDVIASKSQDEVKKPVEIEIPENFLCPISFELMLNPVIVSTGQTYERSNIQNWIDRGNRICPKTQEQLQSLILTPNFVMRKLISEWCEEHNVKLEEGLTNRKLKKYRSFEDDCQRTVSIKTLVRHLSFGSIQEQKIAVTEIRKLSKSSSDHRVEIAEAGAIPQLVNLLTSKDVATQENAISCILNLSLQEQNKRLIMLSGAVSYISQVLKVGSMEGRECAAATIYSLSLADENKAIIGASGVISDLLEILEIGSPRGQKDAAGALLNLCMHQGNKGRALKVGIVKPLLKMLSDSNGSLVDDALYIMSVLCGHPEAKATMSNANSLLVLTDILKTGSPRSKENAAAVLLALCKGDWEKLEWLTRLGVVVSLMKLANNGTARARRKAALLLDQLGKS 1445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6813192 6827830 - ClCG01G006100.2 Cla01g00596 264185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00596 1445 SUPERFAMILY ARM repeat 1168 1442 IPR016024 -
Cla01g00596 1445 Coils Coil 958 978 - -
Cla01g00596 1445 Gene3D - 12 83 - -
Cla01g00596 1445 CDD HMA 16 75 IPR006121 GO:0046872
Cla01g00596 1445 Pfam U-box domain 1070 1141 IPR003613 GO:0004842|GO:0016567
Cla01g00596 1445 PANTHER OS01G0127400 PROTEIN 424 831 IPR021763 -
Cla01g00596 1445 SMART arm_5 1239 1279 IPR000225 GO:0005515
Cla01g00596 1445 SMART arm_5 1198 1238 IPR000225 GO:0005515
Cla01g00596 1445 SMART arm_5 1280 1320 IPR000225 GO:0005515
Cla01g00596 1445 SMART arm_5 1362 1402 IPR000225 GO:0005515
Cla01g00596 1445 SMART arm_5 1321 1361 IPR000225 GO:0005515
Cla01g00596 1445 MobiDBLite consensus disorder prediction 285 308 - -
Cla01g00596 1445 Pfam Heavy-metal-associated domain 17 71 IPR006121 GO:0046872
Cla01g00596 1445 Gene3D - 1286 1444 IPR011989 -
Cla01g00596 1445 ProSiteProfiles Heavy-metal-associated domain profile. 20 76 IPR006121 GO:0046872
Cla01g00596 1445 MobiDBLite consensus disorder prediction 1010 1027 - -
Cla01g00596 1445 ProSiteProfiles U-box domain profile. 1069 1143 IPR003613 GO:0004842|GO:0016567
Cla01g00596 1445 Gene3D - 1166 1285 IPR011989 -
Cla01g00596 1445 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1209 1251 IPR000225 GO:0005515
Cla01g00596 1445 SUPERFAMILY RING/U-box 1065 1143 - -
Cla01g00596 1445 MobiDBLite consensus disorder prediction 75 101 - -
Cla01g00596 1445 CDD RING-Ubox_PUB 1074 1116 IPR045210 -
Cla01g00596 1445 Pfam Protein of unknown function (DUF3326) 469 808 IPR021763 -
Cla01g00596 1445 MobiDBLite consensus disorder prediction 1008 1027 - -
Cla01g00596 1445 SMART Ubox_2 1073 1136 IPR003613 GO:0004842|GO:0016567
Cla01g00596 1445 SUPERFAMILY HMA, heavy metal-associated domain 14 78 IPR036163 GO:0046872
Cla01g00596 1445 MobiDBLite consensus disorder prediction 85 101 - -
Cla01g00596 1445 Pfam Armadillo/beta-catenin-like repeat 1198 1237 IPR000225 GO:0005515
Cla01g00596 1445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1069 1145 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g00596 Cla07g00605 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00596 Cla-Chr1:6813192 Cla07g00605 Cla-Chr7:11031387 1.16E-177 dispersed
Cla05g00578 Cla-Chr5:5296216 Cla01g00596 Cla-Chr1:6813192 3.85E-25 dispersed
Cla06g00546 Cla-Chr6:6611238 Cla01g00596 Cla-Chr1:6813192 1.23E-24 dispersed
Cla01g00596 Cla-Chr1:6813192 Cla03g00152 Cla-Chr3:1576062 4.60E-116 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00596 - - cmax:111489474 863.218