Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00608 ATGGCGAAGCGCTTGATTCCATCCTTCAATCGTGTCTTGATTGAGAAAATTCTTCCTCCTTCCAAAACCTCTGCCGGCATTCTTCTCCCGGAGAGCTCCACCAAGTTGAACTCCGGCAAGGTGGTTGCGGTGGGACCTGGTGCACGGGATAACAGTGGGAATCTGGTTCCGGTCTGTGTGAAAGAAGGCGATACCGTTCTTTTGCCTGAATATGGAGGCACGCCGGTGAAGCTCGGGGAGAAAGAGACTAGGCGTAGATTTGAGATAATGATTTTAGAAATTGCTGTTTCTTCCCAAAACTGTTCCATTTATTTAGAGATGAAGACATTTTGGGAACTTTACATGGTTGATGGATTGACCGTTCTGATTCAACACTTCTTGTTGAATGTTAGAATGAAGGATATGATCAATTCATGCATTTTTCTTGATGGTTGGGAGGAATGGAGAACTATTGTAGTTGATGGCTAA 468 44.44 MAKRLIPSFNRVLIEKILPPSKTSAGILLPESSTKLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVKLGEKETRRRFEIMILEIAVSSQNCSIYLEMKTFWELYMVDGLTVLIQHFLLNVRMKDMINSCIFLDGWEEWRTIVVDG 155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6938460 6939572 + ClCG01G006240.2 Cla01g00608 264197

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00608 155 PRINTS 10kDa chaperonin signature 61 73 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cla01g00608 155 PRINTS 10kDa chaperonin signature 26 47 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cla01g00608 155 PRINTS 10kDa chaperonin signature 5 20 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cla01g00608 155 Pfam Chaperonin 10 Kd subunit 6 82 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cla01g00608 155 CDD cpn10 4 82 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cla01g00608 155 SUPERFAMILY GroES-like 4 83 IPR011032 -
Cla01g00608 155 Gene3D GroES chaperonin 1 100 IPR037124 GO:0006457
Cla01g00608 155 PANTHER GROES-LIKE FAMILY PROTEIN 1 86 - -
Cla01g00608 155 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 86 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cla01g00608 155 SMART Cpn10_2 4 97 IPR020818 GO:0005524|GO:0006457|GO:0140662
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00608 K04078 groES, HSPE1; chaperonin GroES - csv:101205382 150.984
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00608 Cla-Chr1:6938460 Cla04g00587 Cla-Chr4:19731033 2.00E-41 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g432 . . . . . . . . . . . . . . . . Cpe01g01849 . . . . . . . . . . . . . . Cone13ag0760 Cone19ag0764 . . . Csa05g02023 . . . . . . . . . Bma06g01109 . . . . . . . . . Bhi12g00887 . . . . . . Cla01g00608 Cam01g0636 Cec01g0628 Cco01g0655 Clacu01g0626 Cmu01g0599 Cre09g1903 Lsi09g00659 . Chy09g00851 Cme09g01384
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002067 2 2 2 3 3 2 2 1 2 2 2 2 2 2 1 1 2 4 2 2 2 1 2 2 2 1 2 6 2 3 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00608 Cla_Chr01 FPKM 12.155679 14.432895 22.969427 21.54114 40.308025 44.544567 42.396175 11.21794 11.193774 10.427422