Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00610 ATGCACCCATATAATCGGCTGCCGAGCAGTGGCCACTCAACTCCGTCACCGCCGCCGTCGCCTCTCCGCTCCCCTCGGCTGAGGCACTCTCGGTCCAAGGGCGGCCGCTTCACTCAAGCTCAGCAACCGGGCCGGACCTTTCCACAGCGACTCGCCTGGTTAATCCTCTCCGTTTTACTTCGTCGCCAAGGGATCTTCCTTTTCGCCCCTTTAATCTACATCTCCGGTATGCTTCTTTATATGGGCACTGTCTCTTTCGATGTCGTTCCAGTTATCAAGCATCGCCCTGCTCCTGGCTCTGTTTATCGAAGTCCACAACTCCTTGCCAAGCTTCGCCCCGAGATGGATTCTGACAACACTTCCACTGATGCGATGAGTAACTTCCATTTCTTACATATTTCTGTTTCCGGAGTTTTAATGTTGCCGGGAAGAAGGAAACTAGGCTTCATCATAGAGGTGGGACTGAGCTGTTTTCTTCAACATAGAGGAACAGAAATATCAACAATATGGAAACACTCGTATAAAGGTGGTCAGTGGAAACCATGTATCAGCAATTCCTCAGGAGGAGGTGGGAGGCCTTTCAATTATTTTATTGCATTTCGAGACAATCTCATTTTCTATTCCATTTTAATTCTGGAAATCACTTTATGCCAAAGGTGCTCAGTTTCTATCCTTGAGATGTGTGTAATTGCTCTTGTTATACCCTATCATATTCAGAATTGCCTACCTGAGTCAAATGGGTATATTTATGTTGAGGCAAATGGTGGTCTGAATCAGCAGCGAACATCAATATGCAATGCAGTTGCTGTGGCTGGCTATCTTAATGCAACACTTGTAATCCCTAATTTTCATTTCCACAGCATTTGGAGAGATCCTAGCAAGTTCAGTGAAATATATGATGAGGAATATTTTATCAAGACCTTAGAGAATGATGTACGCATTGTAAACAAGATTCCAGAATACATTATGGAACGCTTCGACCACAACATGACAAATGTCTACAACTTCAGAATAAAGGCATGGTCGTCCATTCAATATTACAGGGATACGGTGCTTCCAAGATTACTTGAAGAACTGGTTATAAGAATTTCACCTTTTGCAAATCGACTTTCTTTTGATGCTCCTCCTGCTGTTCAACGGCTTCGATGTTTAGCAAATTATAAAGCATTGAGATTCTCTAATCCTATATTATCCTTGGGAGAGATTTTGGTTGCTAGGATGAGAGAACGCAGTGCCAGTAATGGTGGCAAGTATATTTCTGTACATCTTCGCTTTGAGGAGGATATGGTTGCATTCTCGTGTTGTATTTTTGATGGAGGACATAAAGAGATGGAAGACATGAAAGCAGCCAGAGAAAAAGGATGGAAAGGAAAGTTCACAAAACCAGGCAGAGTTATACGTCCTGGTGCCATCAGGATTAACGGAAAATGCCCGATGACTCCTTTAGAGGTGGGTTTGATGCTTAGGGGAATGGGATTTGACAATAGCACATTTATTTATTTGGCATCGGGAAAGATATACGATGCTGAGAGAAATATGGCTCCGCTTTTGGAGATGTTTCCACATCTGCTTACGAAGGAAATGCTGGCATCACCTGAAGAACTTTCTCCATTCAAGAATTTTTCTTCCAGGATGGCTGCTATAGACTATACTGTTTGCCTCCATAGTGAGGTGTTCGTGACAACACAGGGTGGTAACTTCCCTCATTTTCTGATGGGTCATAGAAGATACTTGTACGGTGGACACTCCAAAACTATTAGGCCAGACAAGCGGAAGTTAGCATTACTTTTTGATAACCCTACCATTGGATGGAAAAATTTCAAGAGACAAATGTTGAACATGCGGAGTCACAGTGATTCCAAGGGATTTGAGCTGAAAAGGCCAAACGACTCGATATACACCTTCCCTTGTCCAGATTGCATGTGCTTTAGCAACAAATCAAACGATACGAAATCGTCATTAGCCCCTTGA 1971 43.28 MHPYNRLPSSGHSTPSPPPSPLRSPRLRHSRSKGGRFTQAQQPGRTFPQRLAWLILSVLLRRQGIFLFAPLIYISGMLLYMGTVSFDVVPVIKHRPAPGSVYRSPQLLAKLRPEMDSDNTSTDAMSNFHFLHISVSGVLMLPGRRKLGFIIEVGLSCFLQHRGTEISTIWKHSYKGGQWKPCISNSSGGGGRPFNYFIAFRDNLIFYSILILEITLCQRCSVSILEMCVIALVIPYHIQNCLPESNGYIYVEANGGLNQQRTSICNAVAVAGYLNATLVIPNFHFHSIWRDPSKFSEIYDEEYFIKTLENDVRIVNKIPEYIMERFDHNMTNVYNFRIKAWSSIQYYRDTVLPRLLEELVIRISPFANRLSFDAPPAVQRLRCLANYKALRFSNPILSLGEILVARMRERSASNGGKYISVHLRFEEDMVAFSCCIFDGGHKEMEDMKAAREKGWKGKFTKPGRVIRPGAIRINGKCPMTPLEVGLMLRGMGFDNSTFIYLASGKIYDAERNMAPLLEMFPHLLTKEMLASPEELSPFKNFSSRMAAIDYTVCLHSEVFVTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRKLALLFDNPTIGWKNFKRQMLNMRSHSDSKGFELKRPNDSIYTFPCPDCMCFSNKSNDTKSSLAP 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6958059 6968515 + ClCG01G006260.2 Cla01g00610 264199

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00610 656 PIRSF UCP009360 26 646 IPR024709 -
Cla01g00610 656 PANTHER PROTEIN ESMERALDA 1 165 189 - -
Cla01g00610 656 PANTHER - 1 127 IPR024709 -
Cla01g00610 656 PANTHER - 239 653 IPR024709 -
Cla01g00610 656 MobiDBLite consensus disorder prediction 1 41 - -
Cla01g00610 656 CDD O-FucT_plant 248 585 IPR024709 -
Cla01g00610 656 PANTHER PROTEIN ESMERALDA 1 1 127 - -
Cla01g00610 656 PANTHER - 165 189 IPR024709 -
Cla01g00610 656 PANTHER PROTEIN ESMERALDA 1 239 653 - -
Cla01g00610 656 Pfam GDP-fucose protein O-fucosyltransferase 248 578 IPR019378 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00610 - - - csv:101205140 1058.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00610 Cla-Chr1:6958059 Cla08g00035 Cla-Chr8:1051326 0 dispersed
Cla08g01165 Cla-Chr8:24480113 Cla01g00610 Cla-Chr1:6958059 3.10E-69 dispersed
Cla01g00610 Cla-Chr1:6958059 Cla11g01817 Cla-Chr11:31821117 4.05E-90 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g433 . Blo16g00730 Bda01g01817 Bda11g00164 . . . . . . . . . . . . Cpe01g01848 . . . . . . . . . . . . . . Cone13ag0759 Cone19ag0763 Cone6ag0395 Cone9ag0421 . Csa05g02022 . . . . . Bda11g00164 . Bpe02g01993 Bma01g00466 . . . Cmo15g00996 . Cma15g00957 . Car15g00901 Cpe13g00368 . Bhi12g00905 . . . . . . Cla01g00610 Cam01g0638 Cec01g0630 Cco01g0657 Clacu01g0628 Cmu01g0601 Cre09g1901 Lsi09g00661 . Chy09g00850 Cme09g01383
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004536 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00610 Cla_Chr01 FPKM 3.174553 3.067086 3.993455 4.535028 2.894056 3.355657 3.009736 2.66386 2.037416 3.242285