Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00614 ATGGAACACTTTTTGGGTCTTCTCCGAATTCGGGTGCTGCGCGGTGTTAATCTCGCTATTCGTGATTCTCGTAGCAGCGATCCTTATGTCGTCGTCACAATGGGTGAGCAGAGGTTGAAGACCCGGGTGGTGAAAAATAATTGCAACCCTGAATGGAACGATGAGTTGACTCTTTCAATTGCAGATCTCAGGACTCCAATCGGTATATCAGTGTATGACAAAGACACACTAACAGACCATGACAAAATGGGAGATGCCGAGATCGACATCGAACCATACATCGAATGTTTGACAATGGGACTGGAGAGCCTCCCAGATGGGTGTGTGGTTAAGAGAGTATATCCAAAAAGAACAAACAATTTAGCTGATGAGAGCCAATGTGTTTGGCACAAGGGGAAAATTGTACAGAACATGTTCCTGAGGTTGAAGAACGTGGAGTGTGGTGAGGTAGCAATTCAGCTCGAATGGATCGACGTTCCTGGTGCTAAGGGTTTGCCAGTCGGGGGTACAAGCAACTTCTGA 522 46.55 MEHFLGLLRIRVLRGVNLAIRDSRSSDPYVVVTMGEQRLKTRVVKNNCNPEWNDELTLSIADLRTPIGISVYDKDTLTDHDKMGDAEIDIEPYIECLTMGLESLPDGCVVKRVYPKRTNNLADESQCVWHKGKIVQNMFLRLKNVECGEVAIQLEWIDVPGAKGLPVGGTSNF 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7017547 7019984 + ClCG01G006300.1 Cla01g00614 264203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00614 173 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 163 IPR044562 -
Cla01g00614 173 ProSiteProfiles C2 domain profile. 1 106 IPR000008 -
Cla01g00614 173 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 158 IPR035892 -
Cla01g00614 173 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 10 1 163 - -
Cla01g00614 173 SMART C2_3c 7 102 IPR000008 -
Cla01g00614 173 Pfam C2 domain 6 92 IPR000008 -
Cla01g00614 173 Gene3D C2 domain 5 164 IPR035892 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00614 Cla-Chr1:7017547 Cla07g00578 Cla-Chr7:9925592 2.58E-78 dispersed
Cla01g00614 Cla-Chr1:7017547 Cla04g01044 Cla-Chr4:25616339 2.45E-70 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00614 - - csv:101204404 317.775