Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00615 ATGAAGAGGGAACATCACCATCTTCATCCCCGTCCGGAGCCGCTTTCCATGGCTGCCGTCCCTAATGGGGAGAGTTATTTGAACACTGGTAAGGCTAAACTCTGGGAGGAGGAAGCGCAGCTCGATGGAGGAGCGGATGAGCTTCTTGCTGTTTTGGGTTATAAGGTTAAGTCGTCGGACATGGCGGAAGTTGCTCAGAAGCTCGAACAGCTTGAAGAAGCGATGTGTCAAAATCAGGACACTGGCCTATCGCATCTCGCTTTTGACACTGTTCATTATAATCCCTCTGATCTGTCAACTTGGCTTGAAAGTATGCTCATGGAGCTCCATCCGACGCCTAATTTTGCGCCGCTGCCACCTCCTTCGCAGCTGGACGATTCGTCGTTTTTAGCTCCGGCGGAATCCTCCACCATCACTTCCATTGATATCGACCCTCAACGGCAAACCAGCAACCGGATTTTCGAGGAATCTTCTAGTTCTGATTACGACCTTAAAGCTATCACAAGCAGCGCGATTTATTCACCGAGAGAGAATAAACGTTTGAAATCCTCTGAGTCGGACTCGGACTTGTTCTCCACCTCGGCGATTGGGGCTTCCGATTCTGTAACTCGCCCGGTCGTCCTCGTCGATTCGCAGGAGAATGGAATTCAACTGGTTCATGCTCTGATGGCTTGTGCCGAAGCTGTACAGCAGAACGATCTGAATCTAGCGGAGGCTCTGGTGAAGCGAATCGGTTACTTGGCGATTTCTCAAGCCGGAGCGATGAGGAAGGTCGCCACGTTCTTCGCCGAAGCGTTGGCACGCCGAATCTACAGGCTCCGCCCTGAGAATCCCCTCGATCATTCAGTGTCCGATAGGCTTCAGATGCATTTCTACGAGAGCTGTCCATATCTGAAATTCGCGCATTTCACCGCGAATCAAGCGATTCTCGAAGCCTTCGAAGGGAAGAAGCGTGTTCACGTAATCGATTTCTCGATGAACCGAGGGATGCAGTGGCCGGCTCTGATTCAAGCCCTAGCTCTACGGCCGAATGGTCCTCCAGCCTTCCGCCTCACTGGAATTGGCCCTCCGGCGCCGGATAACTCAGATTACCTCCAAGAAGTGGGCTGGAAACTCGCTGAATTGGCCGAAGCTATCCATGTGGAGTTCGAGTACAGAGGATTTGTAGCGAATAGCTTGGCGGATCTGGACGCATCGATGCTGGAGCTCCGGCCGAGCGAGGTGGAATCGGTGGTGGTGAACTCAGTGTTTGAGCTGCATAAGTTACTCGCTCGGCCTGGTGCCCTCGAAAAGGTTCTGTCGGTGGTGAAGCAGATGAAGCCGGAGATCATAACGGTGGTGGAGCAGGAAGCGAACCACAACGGTCCGGTTTTCGTGGACCGGTTCACTGAGTCACTCCATTACTACTCGACGCTTTTTGACTCGTTGGAAGGCTCCCCCAACAACCAAGACAAGATCATGTCCGAAATGTACCTTGGGAAGCAAATTTGCAACGTTGTGGCTTGTGAAGGCGCGGACCGAGTGGAACGTCACGAGACCCTGACTCAGTGGCGGACTCGGTTGTCCTCTGCCGGGTTCGAACCCATCCACCTTGGCTCGAACGCATTCAAGCAAGCTAGTATGCTCCTCGCCCTATTCGGCAGCGGAGAAGGCTACCAGGTGGAAGAAAACAACGGATCACTAATGCTAGGGTGGCACACTCGCCCCCTCATCGCCACATCCGCCTGGAAACTCGGCAACAACCCGGTGGTCGCTCACTGA 1761 53.49 MKREHHHLHPRPEPLSMAAVPNGESYLNTGKAKLWEEEAQLDGGADELLAVLGYKVKSSDMAEVAQKLEQLEEAMCQNQDTGLSHLAFDTVHYNPSDLSTWLESMLMELHPTPNFAPLPPPSQLDDSSFLAPAESSTITSIDIDPQRQTSNRIFEESSSSDYDLKAITSSAIYSPRENKRLKSSESDSDLFSTSAIGASDSVTRPVVLVDSQENGIQLVHALMACAEAVQQNDLNLAEALVKRIGYLAISQAGAMRKVATFFAEALARRIYRLRPENPLDHSVSDRLQMHFYESCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNRGMQWPALIQALALRPNGPPAFRLTGIGPPAPDNSDYLQEVGWKLAELAEAIHVEFEYRGFVANSLADLDASMLELRPSEVESVVVNSVFELHKLLARPGALEKVLSVVKQMKPEIITVVEQEANHNGPVFVDRFTESLHYYSTLFDSLEGSPNNQDKIMSEMYLGKQICNVVACEGADRVERHETLTQWRTRLSSAGFEPIHLGSNAFKQASMLLALFGSGEGYQVEENNGSLMLGWHTRPLIATSAWKLGNNPVVAH 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7031201 7032961 - ClCG01G006310.1 Cla01g00615 264204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00615 586 Pfam Transcriptional regulator DELLA protein N terminal 46 113 IPR021914 -
Cla01g00615 586 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 20 578 IPR005202 -
Cla01g00615 586 ProSiteProfiles GRAS family profile. 209 577 IPR005202 -
Cla01g00615 586 Pfam GRAS domain family 218 577 IPR005202 -
Cla01g00615 586 SMART DELLA_2 46 119 - -
Cla01g00615 586 MobiDBLite consensus disorder prediction 1 21 - -
Cla01g00615 586 Coils Coil 54 74 - -
Cla01g00615 586 PANTHER DELLA PROTEIN GAI1-RELATED 20 578 IPR030006 GO:0003712|GO:0005634
Cla01g00615 586 Gene3D - 44 109 IPR038088 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00615 Cla-Chr1:7031201 Cla03g00815 Cla-Chr3:10353107 0 dispersed
Cla09g00467 Cla-Chr9:4481876 Cla01g00615 Cla-Chr1:7031201 7.95E-49 dispersed
Cla09g00468 Cla-Chr9:4486816 Cla01g00615 Cla-Chr1:7031201 1.12E-42 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60375 PF03514 GRAS 1.60E-135 CL0063 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00615 K14494 - csv:101204164 1091.64