Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00618 ATGCCTCGAAGGCCAACAAAGCGGCGCCGGCTGCTGGGAACTCCTCGACCTTTAACTTTTTCCTCATTTGCTCGAACTTCTTGTATGGTGAGGAATCAACATTTGAAGTCGAAAGTAATGGAATCTCACCCTAAACATGAAGGTAATGGTTTTATTAGGAATAGTCCTGAGCCTCAGAGTGAATCATCTGACTCTTCTTCCAGTGGTGAACAGTTTGAAGAAGTTCAAGCAGACTTTGCCTTTTTTGATCCAAAACCTGATGATTTTCATGGGGTGAAGACATTGCTGCAGAACTACCTAGATGACACACAGTGGGATATCAGTGGATTTTCTGATTTAATATTGGGACAAACCACAGTTGGCAGTGTTGTCAAAGTAGAGGGGGATGAAGATAATGGAGTATTCTCTTTTATCACAGCCCTTAACTTGGAAAGATATAAGGACAGTAGATCTATACTGGAGCTCAAGGGGTATCTCTCCAAAGTTTGCCAGGACAACAATATAAAGAATGACTTGAAACAACTTCTGGAGGAGCAAGCATCCAGTGTAGGTCTCATCGTTTCTCAGAGAATTGTGAATCTTCCACCGCAACTTCTGCCACCACTTTATGATGCCCTTTTTGATGAAATCTCTTGGGCTATTGAGGATGAGGTTAGATATAGTAACATTTGGACGTTCTTCTTCTCAAGTATCCTCATGGATGTGTTGCCAACTAAAGAGCTCCAGGATTCCTTCCGCTTCAAATTGTATATTTTAGTCAGTAAAATTTACAAGCTCAAGACTACAAATCATAAGAAAAAACCAACTCCTGAAACAGAAGAACCAATTATCTATGTTAAGGCAGAAGATGAAATATTTCACAAGTTGCTTCTTAGACTCACTTCAAACTGTCCTAACATTTGTGCTTATGGTCCTTCTGCTTTCCCTTGCACATCCAACCACAGACAACTAACGAGGCAACTAAAAGGTTACCAGTTAATGGGAATAGTAATGGCTGTTGAAGCAAGCAAAGTTCCCGCATTTCGAGATGAGTTGAAATCTTTAATAAGTGAATCATAG 1059 40.32 MPRRPTKRRRLLGTPRPLTFSSFARTSCMVRNQHLKSKVMESHPKHEGNGFIRNSPEPQSESSDSSSSGEQFEEVQADFAFFDPKPDDFHGVKTLLQNYLDDTQWDISGFSDLILGQTTVGSVVKVEGDEDNGVFSFITALNLERYKDSRSILELKGYLSKVCQDNNIKNDLKQLLEEQASSVGLIVSQRIVNLPPQLLPPLYDALFDEISWAIEDEVRYSNIWTFFFSSILMDVLPTKELQDSFRFKLYILVSKIYKLKTTNHKKKPTPETEEPIIYVKAEDEIFHKLLLRLTSNCPNICAYGPSAFPCTSNHRQLTRQLKGYQLMGIVMAVEASKVPAFRDELKSLISES 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7070945 7074176 + ClCG01G006340.2 Cla01g00618 264207

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00618 352 PANTHER BRCA2 AND CDKN1A INTERACTING PROTEIN 33 350 IPR025602 -
Cla01g00618 352 PANTHER BRCA2 AND CDKN1A-INTERACTING PROTEIN 33 350 - -
Cla01g00618 352 MobiDBLite consensus disorder prediction 36 69 - -
Cla01g00618 352 PIRSF BCP1 27 352 IPR025602 -
Cla01g00618 352 MobiDBLite consensus disorder prediction 53 69 - -
Cla01g00618 352 MobiDBLite consensus disorder prediction 36 50 - -
Cla01g00618 352 Pfam BCCIP 74 286 IPR025602 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00618 K15262 BCP1, BCCIP; protein BCP1 - csv:101218410 424.861
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g455 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo15g01001 . Cma15g00961 . Car15g00907 Cpe13g00363 . Bhi12g00916 . . . . . . Cla01g00618 Cam01g0646 Cec01g0638 Cco01g0664 Clacu01g0634 . . Lsi09g00668 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007192 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 5 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00618 Cla_Chr01 FPKM 1.137432 0.89302 38.041691 38.340267 33.616047 34.18568 33.022583 0.977099 0.599337 1.02091