Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00619 ATGTTGGCCTCTGCAATTTCAATACCCACCAATTTCAACTTCCCCCTTTCCTATTCTCAACGCACACTCTCAATCATTCACATGAAGCTTTTTGCAGTTGGCGCCATGGGAATTTCTAAACCCACAGATCATTCGCTCTTTCTCTATCGTCCTCTTTTCTCTTCAGAATCTCTCTCGAAACGCGTTGTTTGCAGGCGTGTTAGCAGTGACGGTGGTGGTGCTGTTGATTCTACACAGCAGCAGTCTGCAGCTCCTGGCATCAAAGATGTACAGAATGATTCTTCTAGTGTTGGAGACAGTTATGTGGCATTATTTGTCCGGATGCTCGGCTTGGATCATGATCCTCTCGATAGAGAACAAGCAACCATAGCTTTATGGAAATATTCCCTTGGAGGGAAGAAGCACATAGATGCCATCATGCAGTTTCCTGGATGCATAAATCTGACAGTAAATCTTCTTAGGTCAGAGTCAATCTCTACGTGTGAAGCAGCTGCTGGCCTTCTACGGTCAATTTCTCTGGTGAACTTATACCGAGATTCAGTTGCAGAAAGTGGAGCAATTGAAGAGATAACTGGCTTGCTTACTCAGCCGTCCTTGACTCCCGAGGTGAAGGAGCAAAGCATCTGTGTTTTGTGGAATTTGTCAGTAGATGAAAAACTCAGAACTAAGATTGCAAACACTGATATTCTGCCATTGCTTAGTAAGAATCTTGATGATGAGGACATGAAGGTGAAAGAAGCAGCTGGAGGGGTTATAGCAAATCTGGCTTTGAGCCCATGTAACCATGGGGTTATTGTCGAATCAGGCTTAATTCCTAAACTGGCGTATCAGTTGAAAGCTGAGGCAGACAGCTCAAAAATTTTGAGAAAGGAAGCAAGAAATGCATTGCTTGAACTTTCTAAAGATGAATATTATAGAATTCTTGTCATAGAGGAAGGACTGGTTCCAGTACCAATTCTTGGTGCTGCTGCCTATAAATCCTTCAGACCAGGCCTGCATTCATGGCCCAGTTTGCCTGATGGCACAGAAATTGAACAATCTTCCAAAGAACCTTCAAGATTTGGTGCCTCTGAATTACTCCTTGGGTTAAATGTTGACAATAATGCAAACATAGAAGAAGGCAAGATAAATGCAATTGTTGGACGGACACAGCAACAGTTTCTGGCTCGAATAGGTGCCATAGAACTTGAAGATCTGAAGGACTCTCGATCTGAATCATCTACCAGTAACCATCTTACACTCTTACCTTGGATAGATGGTGTGGCTCGACTAGTTTTAATCCTTGAACTTGAGGATGTTAATGCCGTAGTGAGAGCTGCAGAGTCAATCGCTGATGCATGTATCGATGAACACATGCGTATTTCATTCAAGGAAGCTGGAGCAATCAAACATTTAGTCAAGTTTTTAGATTATATGAATAATTCTGTCAAATGGGCTACAGTTCAAGCTCTAGAGAGACTATCGATTAGCAATGTTGTTTGCCAGGCAATTGAAAATGAAGGTGCACTTGGTCCTTTGCTCAGTATTTTAAAGCTCTCAAGTATCCCTGAAAATGTGATGGAGAAGACCCTCGATATACTTTCTCGGATCTTGGACCCTAGTAAAGAAATGAAATCAAAGTTTTACAGTGGACCGGTAAATGGGTCTCAAGGAGGACAACATTCAGAAAGCAATTTTGAAGCTTCTACCAGGAAAGATGTGCTGGATGTTGATGTTGTTTCTCGCCTAGTTGAGATTTTGAACTCCTCATCCCCAAACTTGAAACGGAAAGCTGCTTCTATCCTGGAATTTGTTTCTATTATGGACCCAAGCATGGAAATAATCGATTCCATGGAGATAGAGTCTGGATTGTCGGCTGTTTTCCAGCTTGGAGTTTCAATAGATTCTGATGCTGAAGATTGGCAGCCTGAAAGATATGCCCTTGAAGTTGAGGAAGCTGGTCTTGCAATTTCAGCAGCCTCCCGACTATTAACAAAGCTTCTAGATTCTGAAAAGTTCTGCAACAAAATAAACTCCACCCATTTCACTAAGTTGCTTCGTCGAATCCTGAAGTCGGACATTCCCATTAACCACAAAGATTGGATTGCTGCTTGCCTAATCAAAGTCAGCTCCATTTCAGCTCTGAACACGGACTCCGGAGATCCTATCAACATGGAGGTCACTCTGTACGAAACTATACCGAGACTTATTCAACAGATCAAAAGCTCCTTCTCCCTGGAAGTTCAGGAATCTGCTGTTGTGGAGCTGAACAGAATAGTCTCAGAGGGCATAGTCGATGCTACCCGAGCTGTTGCTTCAAAAGGCGGTATCTTTCCATTGGTAAAGCTGATCAATGAAGGAAGTGAGAGGGCAACAGAAGCAGCCTTAGCCATACTGTATAATCTGAGCATGGATACTGAAAATCATCCAGCAATTATAGCTGCGGGAGCTGTGCCAGCATTGAAGAAAATTGTTCTATCGCAACGAGCGCAGTGGCGACAAGCTCTTTATTTGTTGAGGACGTTGCCTACATGA 2514 42.92 MLASAISIPTNFNFPLSYSQRTLSIIHMKLFAVGAMGISKPTDHSLFLYRPLFSSESLSKRVVCRRVSSDGGGAVDSTQQQSAAPGIKDVQNDSSSVGDSYVALFVRMLGLDHDPLDREQATIALWKYSLGGKKHIDAIMQFPGCINLTVNLLRSESISTCEAAAGLLRSISLVNLYRDSVAESGAIEEITGLLTQPSLTPEVKEQSICVLWNLSVDEKLRTKIANTDILPLLSKNLDDEDMKVKEAAGGVIANLALSPCNHGVIVESGLIPKLAYQLKAEADSSKILRKEARNALLELSKDEYYRILVIEEGLVPVPILGAAAYKSFRPGLHSWPSLPDGTEIEQSSKEPSRFGASELLLGLNVDNNANIEEGKINAIVGRTQQQFLARIGAIELEDLKDSRSESSTSNHLTLLPWIDGVARLVLILELEDVNAVVRAAESIADACIDEHMRISFKEAGAIKHLVKFLDYMNNSVKWATVQALERLSISNVVCQAIENEGALGPLLSILKLSSIPENVMEKTLDILSRILDPSKEMKSKFYSGPVNGSQGGQHSESNFEASTRKDVLDVDVVSRLVEILNSSSPNLKRKAASILEFVSIMDPSMEIIDSMEIESGLSAVFQLGVSIDSDAEDWQPERYALEVEEAGLAISAASRLLTKLLDSEKFCNKINSTHFTKLLRRILKSDIPINHKDWIAACLIKVSSISALNTDSGDPINMEVTLYETIPRLIQQIKSSFSLEVQESAVVELNRIVSEGIVDATRAVASKGGIFPLVKLINEGSERATEAALAILYNLSMDTENHPAIIAAGAVPALKKIVLSQRAQWRQALYLLRTLPT 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7075553 7082358 + ClCG01G006350.1 Cla01g00619 264208

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00619 837 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 50 837 - -
Cla01g00619 837 Gene3D - 395 623 IPR011989 -
Cla01g00619 837 SMART arm_5 133 173 IPR000225 GO:0005515
Cla01g00619 837 SMART arm_5 490 532 IPR000225 GO:0005515
Cla01g00619 837 SMART arm_5 174 216 IPR000225 GO:0005515
Cla01g00619 837 SMART arm_5 449 489 IPR000225 GO:0005515
Cla01g00619 837 SMART arm_5 798 837 IPR000225 GO:0005515
Cla01g00619 837 SMART arm_5 712 754 IPR000225 GO:0005515
Cla01g00619 837 SMART arm_5 258 301 IPR000225 GO:0005515
Cla01g00619 837 SMART arm_5 217 257 IPR000225 GO:0005515
Cla01g00619 837 SMART arm_5 560 600 IPR000225 GO:0005515
Cla01g00619 837 SMART arm_5 757 797 IPR000225 GO:0005515
Cla01g00619 837 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 768 810 IPR000225 GO:0005515
Cla01g00619 837 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 185 229 IPR000225 GO:0005515
Cla01g00619 837 SUPERFAMILY ARM repeat 105 319 IPR016024 -
Cla01g00619 837 Gene3D - 644 836 IPR011989 -
Cla01g00619 837 SUPERFAMILY ARM repeat 431 826 IPR016024 -
Cla01g00619 837 MobiDBLite consensus disorder prediction 69 94 - -
Cla01g00619 837 MobiDBLite consensus disorder prediction 72 94 - -
Cla01g00619 837 Gene3D - 88 323 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00619 - - - bhj:120067080 1479.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00619 Cla-Chr1:7075553 Cla05g00046 Cla-Chr5:555287 4.73E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g458 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g02014 . . . . . . . . . . . . Cmo15g00939 . Cma15g00902 . Car15g00841 Cpe13g00362 . Bhi12g00918 . . . Hepe02g2639 . . Cla01g00619 Cam01g0647 Cec01g0639 Cco01g0665 Clacu01g0635 Cmu01g0608 Cre09g1893 Lsi09g00669 . Chy09g00841 Cme09g01373
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011868 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00619 Cla_Chr01 FPKM 7.517094 7.097899 6.41129 4.631658 17.632015 20.231741 17.30327 9.568998 7.682742 7.971137