Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00620 ATGGCCGCCAACAAATTTGCCACCATCTTGCATAGAAACTCCAACAAAATCACCCTTATTTTAGTTTACGCTCTTCTCGAATGGGTTCTGATTTTTCTTCTTCTTCTTCATGGTCTTTTCTCTTACCTGATCGTTAAATTTGCAGAGTGGTTTGGGCTGAAGCGCCCCTGTTTCTGGTGTTCCAGAGTCGACCATGTTTTCGAGCCTGGGAGAAAACACTCTTACAGAGATCTTCTTTGTGAAACTCATGCCATGGAGATTTCTAATCTGGGTTACTGCTCGAATCATCGGAAACTATCGGAGTTTCGAGATTTGTGCGAGGATTGCTCGTCCTCTTCTAAGTCTCACGAGTTCTATCAAATTCCTAAGAGCTTTCCCTTTTTTGGAGATGAGAAGGAGGATTTGAGGAGCTGTTCTTGCTGTGGGGAGACTTTGAAGAGTCGATTGTTTTCCCCTTGTATTTTGATTAAACCGAATTGGGGGGATTTGGATTATACCCAGAAGGGGAATTTGATTTCTGAGGCGGAAACTGATGAAATCCATGTTTCTCAACCGGAAGATGTAATCGGAAACAGGGAAATCTCTGTTGTTTCCGGTGGGGAAGAGGCAGAGAAGAACTCCACTTGCTCTGTTTGTGGTTGTGGCTGTAAAGATTCGGCGGTTCATGAGGATGATGATGATAGAGCTGAAATGGGTGCTGAAAAAGATGGGGATTTTCTTGAGCTGGCTGAGGATCTGACCACTTGTAATCAGAAAACAGTTCAAGTTGGTTGTGAGAAAGAGGATGAATTGCCTGAGACTGTTCCTCATCATCTTGAGTTCTACATTGACCGGGGCGATGATCGGCGGCTGATTCCGGTTGATTTGATCGACTTTTCGGCCCCTGACGACAATAACAACGAAAACAGCAACATCCTAAGCCAAGTGAAAGATGAGGAACAAGAACAAGAGGATTGTGGGAATGAAGATGTTGTTTTGGATTTTGGTTCCCACTTTGAGAATCGAAGGCATGGTGTGACTGAAGATTGGGAAGTTCTTTCAGGAGAGAGATTGGCAGAGTTTCTCTCTGTTTCTCTTCATGAGAACAAGCAGAAAGTTGCAGAGGTGGAAGCCATGGATGTGGAGGAAGATCCATCAATGGGAGTAGAAAAGGAAGAAGAAAAAGAAGAAGAAGAAGAAGCTGAGGCTTCCATTGATGAAGCAAGTCAAGCTCCAGCCATTGATGCTCATAAAGAAGTACTTGAAGAATTGGTGGTGACGACAAGGCAGCCAGATTCAGATCTTCATAAAGTAGATTTTCACATGTGGAATGATGAACTTGAAGTAGAGATTTCAATTGGGACAGATATTCCCGACCGCGAACCGATCGATGAGATTCATACTCAAATCGACCTTCCTCCGCATCCTGACGTACATGAAGATCCTTCCCCAAGCTCTTCATTGGAAGTTGACAATATGCAAGATTCTAACAAAGCTGAGAAATCCGAGGAAGCTGAGGAAGCTGTGGAAGCTAAGGAAGAGGAAGAGTTCAAGATCTTGTCCGTGGAAACGTGTTCTCAACCTTCAGACAATCACAAACCATCGAGTTCTGAGGTCAATGAGAATGAGGAAGAAGATAAATTTCCTGATACACCCACTTCTATGGATAGTCTCCACCAGCTACACAAGAAGTTGCTATTACTAGACAGAAAAGAATCTGGAACCGAAGAGTCTTTGGACGGAAGTGTAATAAGTGAGACCGAAGGTGGGGATGGCGTGTTGACTCTTGAGAAATTGAAGTCGGCGTTGAGAACCGAAAGAAAGGCTTTGAATGCTTTATATGCAGAGCTAGAAGAAGAGAGAAGTGCTTCAGCAATAGCAGCCAACCAGACAATGGCGATGATAAATAGGCTTCAAGAGGAGAAAGCAAGTATGCAAATGGAGGCTTTGCAATACCAGAGAATGATGGAGGAGCAATCCGAGTATGACCAGGAAGCTTTGCAGCTTTTGAATGAACTTGTGGTAAAGAGGGAAAAGGAAAAGCAAGAGCTTGAGAAAGAAATCGAAGTTTACCGAAAAAAGCTCCAAGATTATGAAGCCAAAGAGAAAATAGCATTGTTAAGGAACAGAAAAGAAGGGAGCATCCGAAGTCGAAATTCCTCAGTTTCTTGTAGCAATGCCGATGATAGCGATGGGCTATCTATTGATTTGAACACCGAGGCAAAGAAAGACGAAGATTTCTTTTCTAACCAAGAAACGGAGAATCAAAACACCCCGGCTGAGGCAGTCCTTTATTTGGAGGAAACCTTGGCAAACTTTGAGGAAGAAAGGCTGTCCATTCTAGAGGAACTGAAGATGTTGGAAGAGAAGCTCTTCACTTTGAGTGATGAAGAACAACAATTTGAAGACACTGACCATTATTGTGAACAAAATGGGAATGGCTACCATAAGAACTCGGGTTATGCTGCAGAAACAAATGGATTTGAAAACGGTCACAACCCCAAGGAAACAAATGGAAAACATTATCCAGAGAGGAGAGTGATGAGCACAAAAGCCAAAAGACTTCTTCCTCTTTTTGACGATGTAGTCGACGCAGATGTTGTTGAAGATGTAACAAACGGAGAAGAACAAGGGTTTGAATCCGTTTCCATGCAGAAGTCTTTAGACAACAAATTCGACTCAGAATTCAGGAGGGTTGCTGTTGAGGAAGAGGTTGATCACGTCTACGAGAGATTACAAGCACTCGAAGCAGATAGGGAGTTTCTAAAACATTGCATTGGCTCCCTAAGAAAAGGAGACAAAGGCATAGAGCTTCTCCAAGAAATCTTACAGCATCTCCGCGATCTAAGGAGTGTCGATCTTCAGTTGAAGAACATGGGAGACAGTGTCGTAGCGTGA 2877 43.27 MAANKFATILHRNSNKITLILVYALLEWVLIFLLLLHGLFSYLIVKFAEWFGLKRPCFWCSRVDHVFEPGRKHSYRDLLCETHAMEISNLGYCSNHRKLSEFRDLCEDCSSSSKSHEFYQIPKSFPFFGDEKEDLRSCSCCGETLKSRLFSPCILIKPNWGDLDYTQKGNLISEAETDEIHVSQPEDVIGNREISVVSGGEEAEKNSTCSVCGCGCKDSAVHEDDDDRAEMGAEKDGDFLELAEDLTTCNQKTVQVGCEKEDELPETVPHHLEFYIDRGDDRRLIPVDLIDFSAPDDNNNENSNILSQVKDEEQEQEDCGNEDVVLDFGSHFENRRHGVTEDWEVLSGERLAEFLSVSLHENKQKVAEVEAMDVEEDPSMGVEKEEEKEEEEEAEASIDEASQAPAIDAHKEVLEELVVTTRQPDSDLHKVDFHMWNDELEVEISIGTDIPDREPIDEIHTQIDLPPHPDVHEDPSPSSSLEVDNMQDSNKAEKSEEAEEAVEAKEEEEFKILSVETCSQPSDNHKPSSSEVNENEEEDKFPDTPTSMDSLHQLHKKLLLLDRKESGTEESLDGSVISETEGGDGVLTLEKLKSALRTERKALNALYAELEEERSASAIAANQTMAMINRLQEEKASMQMEALQYQRMMEEQSEYDQEALQLLNELVVKREKEKQELEKEIEVYRKKLQDYEAKEKIALLRNRKEGSIRSRNSSVSCSNADDSDGLSIDLNTEAKKDEDFFSNQETENQNTPAEAVLYLEETLANFEEERLSILEELKMLEEKLFTLSDEEQQFEDTDHYCEQNGNGYHKNSGYAAETNGFENGHNPKETNGKHYPERRVMSTKAKRLLPLFDDVVDADVVEDVTNGEEQGFESVSMQKSLDNKFDSEFRRVAVEEEVDHVYERLQALEADREFLKHCIGSLRKGDKGIELLQEILQHLRDLRSVDLQLKNMGDSVVA 958
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7111442 7119316 + ClCG01G006360.2 Cla01g00620 264209

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00620 958 Pfam Zein-binding 591 681 IPR007656 -
Cla01g00620 958 Coils Coil 763 797 - -
Cla01g00620 958 MobiDBLite consensus disorder prediction 373 398 - -
Cla01g00620 958 ProSiteProfiles GTD-binding domain profile. 587 685 IPR007656 -
Cla01g00620 958 Coils Coil 891 911 - -
Cla01g00620 958 MobiDBLite consensus disorder prediction 529 545 - -
Cla01g00620 958 MobiDBLite consensus disorder prediction 462 477 - -
Cla01g00620 958 MobiDBLite consensus disorder prediction 368 406 - -
Cla01g00620 958 PANTHER MYOSIN-BINDING PROTEIN 3 1 954 - -
Cla01g00620 958 Coils Coil 589 616 - -
Cla01g00620 958 Coils Coil 384 404 - -
Cla01g00620 958 Coils Coil 621 694 - -
Cla01g00620 958 MobiDBLite consensus disorder prediction 462 549 - -
Cla01g00620 958 MobiDBLite consensus disorder prediction 487 513 - -
Cla01g00620 958 Coils Coil 488 511 - -
Cla01g00620 958 PANTHER MYOSIN-BINDING PROTEIN 2 1 954 IPR039306 GO:0017022
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00620 - - - csv:101220314 1599.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00620 Cla-Chr1:7111442 Cla02g01656 Cla-Chr2:31349600 6.88E-22 dispersed
Cla01g00620 Cla-Chr1:7111442 Cla07g00065 Cla-Chr7:744473 1.35E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g461 . . . . . . . . . . . . . . . . Cpe01g01841 . . . . . . . . . . . . . . . . Cone6ag0387 Cone9ag0414 . Csa05g02013 . . . Blo11g00974 . . . . . . . . Cmo15g01004 . Cma15g00963 . Car15g00909 Cpe13g00361 . Bhi12g00920 . . . . . . Cla01g00620 Cam01g0648 Cec01g0640 Cco01g0666 Clacu01g0636 Cmu01g0609 Cre09g1892 Lsi09g00670 . Chy09g00840 Cme09g01372
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006446 1 3 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00620 Cla_Chr01 FPKM 19.305593 22.41433 22.27338 22.121124 80.83709 79.453262 85.198051 32.566864 30.382978 30.493406