Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00622 ATGGTTCGCTTCAATGTCACCAGGAAGCTCACATCCCCCATCGACGGCCAGAAGCCCGGTACTTCCGGCCTCCGCAAGAAGGTAAAAGTATTCATTCAACCGAACTACTTGGAGAATTTTGTTCAGTCAACATTTAATGCATTGACTGCTGAAAAAGTCAGAGGGGCTACACTTGTTGTATCTGGAGATGGACGCTATTATTCAAAGGATGCTATTCAGATAATAGTTAAGATGGCTGCAGCAAATGGGGTACGACGTATTTGGGTTGGTCAAAATGGTTTGCTTTCAACTCCAGCTGTGTCAGCTGTTATACGTGAAAGAGTTGGGGTTGATGGATCCCGAGCATCAGGAGCATTTATTTTGACTGCAAGTCACAATCCAGGAGGTCCTAATGAGGATTTTGGGATTAAATACAACATGGAAAATGGCGGCCCTGCACCAGAGGGAATTACTGATAAGATCTATGAAAACACAAAATCCATAAAGGAGTACTTAATTGCTGAGGATCTACCTAACGTGGATATTTCCGCAATAGGTGTTTCTAGCTTTGGCGGACCTGAAGGACAATTTGATGTTGAGGTTTTTGATTCAGCTAGTGACTATGTGAAGTTGATGAAGTCAATATTTGATTTTGAATCTATTCGCAAGCTTCTATCCTCCCCCAAATTCTCATTCTGTTATGATGCTCTACATGGTGTTGCTGGAGCTTATGCAAAACGTATTTTTGTGGAAGAGCTTGGTGCACAAGAAAGCTCATTACTGAACTGCGTGCCTAAGGAGGACTTCGGAGGAGGTCATCCTGACCCCAATCTGACTTATGCCAAGGAATTGGTTGCTCGTATGGGATTGGGTAAATCAAGCTCTGGAGAAGAACCTCCAGAATTTGGTGCTGCTGCTGATGGTGATGCAGATCGCAATATGGTCCTTGGTAAAAGGTTTTTTGTCACTCCTTCAGACTCTGTTGCCATTATTGCTGCTAATGCTGTTGAAGCTATTCCATACTTCTCTGCTGGTTTGAAGGGTGTTGCCAGGAGCATGCCAACCTCTGCTGCACTAGATGTGGTTGCCAAAAACTTGAACTTGAAGTTTTTTGAGGTTCCCACCGGCTGGAAATTTTTTGGTAATTTAATGGATGCAGGAATGTGCTCTGTATGTGGGGAAGAAAGTTTTGGAACTGGTTCTGACCATATTCGTGAGAAAGATGGAATTTGGGCAGTTTTGGCTTGGTTATCTATTCTTGCTTATAAAAACAAGGGAAACCTTGATGGTGGAAAGCTTGTGACAGTCGAAGACATAGTTCGCCAACATTGGGCCACCTATGGTCGTCATTATTATACTAGATACGATTACGAGAATGTTGACGCTGGAGCAGCAAAGGAGCTAATGGCAAATCTGGTGAAGCTGCAATCTTCACTTGCCGAAGTTAATGGAATTGTCCAAGGAATCCGCTCGGATGTGTCAAAGGTTGTCCATGGTGATGAATTTGAGTATAAAGATCCAGTTGATGGTTCCATCTCCAAGCACCAGGGAATTCGATATTTGTTTGAGGATGGTTCACGACTGGTCTTCCGCCTATCTGGAACTGGCTCTGAAGGTGCAACAATTCGGCTCTACATCGAGCAATATGAGAAAGATCCGTCAAAAACTGGGAGAGATTCTCAGGAAGCTCTTGCTCCTCTGGTGGAAGTTGCTCTTAAGCTCTCAAAAATGCAAGAATTCACCGGCCGATCCGCCCCTACCGTCATTACATAA 1752 43.95 MVRFNVTRKLTSPIDGQKPGTSGLRKKVKVFIQPNYLENFVQSTFNALTAEKVRGATLVVSGDGRYYSKDAIQIIVKMAAANGVRRIWVGQNGLLSTPAVSAVIRERVGVDGSRASGAFILTASHNPGGPNEDFGIKYNMENGGPAPEGITDKIYENTKSIKEYLIAEDLPNVDISAIGVSSFGGPEGQFDVEVFDSASDYVKLMKSIFDFESIRKLLSSPKFSFCYDALHGVAGAYAKRIFVEELGAQESSLLNCVPKEDFGGGHPDPNLTYAKELVARMGLGKSSSGEEPPEFGAAADGDADRNMVLGKRFFVTPSDSVAIIAANAVEAIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDAGMCSVCGEESFGTGSDHIREKDGIWAVLAWLSILAYKNKGNLDGGKLVTVEDIVRQHWATYGRHYYTRYDYENVDAGAAKELMANLVKLQSSLAEVNGIVQGIRSDVSKVVHGDEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLVEVALKLSKMQEFTGRSAPTVIT 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7172773 7181655 + ClCG01G006380.1 Cla01g00622 264211

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00622 583 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 317 440 IPR005846 GO:0005975|GO:0016868
Cla01g00622 583 SUPERFAMILY Phosphoglucomutase, first 3 domains 199 314 IPR016055 GO:0005975|GO:0016868
Cla01g00622 583 CDD PGM1 11 583 - -
Cla01g00622 583 Gene3D - 423 583 - -
Cla01g00622 583 PRINTS Phosphoglucomutase/phosphomannomutase family signature 117 131 IPR005841 GO:0005975|GO:0016868
Cla01g00622 583 PRINTS Phosphoglucomutase/phosphomannomutase family signature 222 241 IPR005841 GO:0005975|GO:0016868
Cla01g00622 583 PRINTS Phosphoglucomutase/phosphomannomutase family signature 258 271 IPR005841 GO:0005975|GO:0016868
Cla01g00622 583 PRINTS Phosphoglucomutase/phosphomannomutase family signature 293 308 IPR005841 GO:0005975|GO:0016868
Cla01g00622 583 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 4 114 IPR045244 GO:0004614|GO:0005975
Cla01g00622 583 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 114 583 IPR045244 GO:0004614|GO:0005975
Cla01g00622 583 SUPERFAMILY Phosphoglucomutase, C-terminal domain 442 583 IPR036900 GO:0016868|GO:0071704
Cla01g00622 583 Gene3D - 314 412 - -
Cla01g00622 583 Pfam Phosphoglucomutase/phosphomannomutase, C-terminal domain 492 546 IPR005843 GO:0016868|GO:0071704
Cla01g00622 583 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 17 164 IPR005844 GO:0005975|GO:0016868
Cla01g00622 583 Gene3D - 205 313 - -
Cla01g00622 583 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 200 309 IPR005845 GO:0005975
Cla01g00622 583 SUPERFAMILY Phosphoglucomutase, first 3 domains 4 229 IPR016055 GO:0005975|GO:0016868
Cla01g00622 583 Gene3D - 6 204 - -
Cla01g00622 583 SUPERFAMILY Phosphoglucomutase, first 3 domains 301 447 IPR016055 GO:0005975|GO:0016868
Cla01g00622 583 PANTHER BNAA09G30060D PROTEIN 114 583 - -
Cla01g00622 583 PANTHER BNAA09G30060D PROTEIN 4 114 - -
Cla01g00622 583 ProSitePatterns Phosphoglucomutase and phosphomannomutase phosphoserine signature. 118 127 IPR016066 GO:0000287
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00622 K01835 pgm; phosphoglucomutase [EC:5.4.2.2] - csv:101218883 1118.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00520 Cla-Chr1:5649304 Cla01g00622 Cla-Chr1:7172773 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g464 . . . . . . Bma14g01897 . . . . . . . . . Cpe01g01839 . . . . . . . . . . . . . . . . Cone6ag0384 Cone9ag0411 . Csa05g02011 . . Blo06g01007 Blo11g00973 . . . . . . . Cmo04g02216 Cmo15g01007 Cma04g02117 Cma15g00965 Car04g02059 Car15g00912 Cpe13g00359 . Bhi12g00924 . . . . . . Cla01g00622 Cam01g0650 Cec01g0643 Cco01g0668 Clacu01g0638 Cmu01g0612 Cre09g1890 Lsi09g00672 . Chy09g00838 Cme09g01370
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005872 2 2 2 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00622 Cla_Chr01 FPKM 5.021417 5.802352 18.887938 18.266825 15.292684 14.894465 17.825596 7.568251 7.867613 10.707715