Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00623 ATGACAAGGCTGCATTGTCTTCTTCTCTTTTCATTACTAGTCATCATCCATGGCAAAAGCTTCAATAATTTCATGTCTTGCTCCCAAACCCCTTATCCAGACCTCTGCTTCCATTACATAAACTCGAACAACCACGCATCGACTGCCGGTATTGGTGAAACTTCTCTCATCGTCACTGATCACTTTCAAAACTCAGCCATTCGATCCACTTTGAACCAAGCCATGATTGTCCATGACCATCTTCGCTCCGCCATGGTTCTTGATTCATTTGATGACGACGACAGAACTAAATTCGCTTTAATCGATTGTTTGGAACTCTATGAGGATTCGATCGCCGAGCTCAATCATTCGGCAATCAGTTTCATGAATATCAATTCGATTGACCACTTGACGTTGTTAAGTGCTTCATTAGCGAACCATCAAACATGTCAAGATGGATTTCGAGATTTTGGATTTTCGTCTGATGATTTGAATAATTTCTTTTTTCCATTTCAAATTTTGAGTAACTTCTCAAAATTGGTTAGCAATTCTCTTGCCATCACGAAGGCCGCCACGGCAGCCGCCGCCACTAGTTCCTCCAACTCCGGTGGCCGACGGTTGTTAGGTGGCTCGTTTCCCAAGTGGGTTTACAATGATGATAGGATGCTCCTTCAGGGCGTGGTCGGGAATCGCGCAGATATGGTGGTCGCCCAAGATGGAAGCGGCAATTTTAGGACGATATCGGAGGCGGTGGCCGCGGCGGAGGAGGCGAGGAAGGGAAGTGGAAGGTTTGTTATATATGTAAAAGGTGGGATTTACAAAGAGAATGTTGTGATTAAGAAGAGGATGAAGAATATAATGATGATTGGAGACGGGATTGATAGGACGACCGTCACGGCCATGAAGAACGTCCAAGATGGATCAACTACTTTCCGATCAGCCACTTTTGCGGTGGCCGGCGAAGGATTCATCGCCAAAGACATGACGTTCGAGAACACGGCGGGGCCAGAGAAACACCAAGCTGTCGCACTCCGATCTAATGCTGATCGCTCACTTTTCTACCGATGCAGCTTCAAAGGCTACCAAGACACTTTGTACGCCCACTCCAACCGCCAGTTCTATCGTGAATGCCACATTTACGGAACTGTCGACTTCATTTTCGGCGACGGCATTGCTGTTTTTCAAAACTGCAACATCTTTGTCAGAAAGCCGATGATGCACCAAAAAAATACCATCACGGCGCAGGCGAGGTCGGACCCAAATGAGAACACCGGGTTCGTGATCCACAATTCCGTCATCGGAGCAGCGCCGGACTTGAAGCCGGTGGAGGGTATGTACGGAACTTATTTGGGGAGGCCATGGAAGGTGTATTCGAGGACAGTGATAATGAAGAGTTTTTTGGATGGTCTGATTGAACCGGCCGGGTGGCTTCCTTGGGCCGGAGATTTCGGTCTGAGGACGGTTTATTATGGCGAGTTTATGAACGCTGGTGGTGGAGCAAATACGAAAGGGAGGGTGCGGTGGCCGGGATACCATGTGATGACGAGTGCGGCGGAGGCTGAGAGGTTCACGGTGGAGAATTTCTTGGAAGGAGGAGGTTGGATTCCGGCCACCGGAGTGCCATTCGCAAATGGGCTATGA 1620 48.46 MTRLHCLLLFSLLVIIHGKSFNNFMSCSQTPYPDLCFHYINSNNHASTAGIGETSLIVTDHFQNSAIRSTLNQAMIVHDHLRSAMVLDSFDDDDRTKFALIDCLELYEDSIAELNHSAISFMNINSIDHLTLLSASLANHQTCQDGFRDFGFSSDDLNNFFFPFQILSNFSKLVSNSLAITKAATAAAATSSSNSGGRRLLGGSFPKWVYNDDRMLLQGVVGNRADMVVAQDGSGNFRTISEAVAAAEEARKGSGRFVIYVKGGIYKENVVIKKRMKNIMMIGDGIDRTTVTAMKNVQDGSTTFRSATFAVAGEGFIAKDMTFENTAGPEKHQAVALRSNADRSLFYRCSFKGYQDTLYAHSNRQFYRECHIYGTVDFIFGDGIAVFQNCNIFVRKPMMHQKNTITAQARSDPNENTGFVIHNSVIGAAPDLKPVEGMYGTYLGRPWKVYSRTVIMKSFLDGLIEPAGWLPWAGDFGLRTVYYGEFMNAGGGANTKGRVRWPGYHVMTSAAEAERFTVENFLEGGGWIPATGVPFANGL 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7182132 7184540 - ClCG01G006390.1 Cla01g00623 264212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00623 539 CDD PMEI-like_3 26 178 - -
Cla01g00623 539 SMART PMEI_2 16 180 IPR006501 GO:0004857
Cla01g00623 539 TIGRFAM PME_inhib: pectinesterase inhibitor domain 26 182 IPR006501 GO:0004857
Cla01g00623 539 Pfam Pectinesterase 226 524 IPR000070 GO:0030599|GO:0042545
Cla01g00623 539 SUPERFAMILY Pectin lyase-like 224 537 IPR011050 -
Cla01g00623 539 ProSitePatterns Pectinesterase signature 1. 253 272 IPR018040 -
Cla01g00623 539 Gene3D - 222 539 IPR012334 -
Cla01g00623 539 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 184 IPR035513 -
Cla01g00623 539 ProSitePatterns Pectinesterase signature 2. 372 381 IPR033131 -
Cla01g00623 539 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 26 182 IPR035513 -
Cla01g00623 539 Pfam Plant invertase/pectin methylesterase inhibitor 26 180 IPR006501 GO:0004857
Cla01g00623 539 PANTHER PECTINESTERASE 20 538 - -
Cla01g00623 539 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 20 538 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00623 Cla-Chr1:7182132 Cla05g00797 Cla-Chr5:7768370 2.78E-161 dispersed
Cla01g00623 Cla-Chr1:7182132 Cla05g02243 Cla-Chr5:34086014 3.12E-121 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00623 - K01051 csv:101219120 888.641