Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00626 ATGTCTGAGAATCAGGAACCACCAAATCCGGCGGCTACCGCTGGGAGTTCGTCTTCCGGCGTTCGAATGGAAGCAGGGCCACCGCACGAGGCGTTATTTCTTGTACTGAGTTATCTTCCTCTCTTTGAGCTTCTTTCCATGAGGGCAGTGTGCGTATCGCTGAGAGACGCAGTGGAACATGATGTGTTGCCGTGGCTTCACATCCTCGTCGATCGGCGTTTGAGCTCCCGGCTATCCGATTACACTCTGGGGAGAATCGCCAGGAAGGCCGGTGGTCGCCTTAGAACTTTGGCTTTGATCAATTGTTTCAAGATTTCAGATTCTGGACTTCACGAAGTTGTTGAGAAGAATCCTCTTCTCACCAAGCTTTATGTACCTGGATGCACGAGTTTGACTCCTGCGGGAGTGGTTAGGGCAGTGGAGACTTTATCTCAACATTCTCACAATTTGAAGAGCCTAATGATTGGTGGCATTTACAACATAGAGAACCAACACCTTGAAGTCCTCAAATGCCACCTTTTCAAGAACCGATCGCAGCAGCAGCAGCAGGAGCGGCAACACCACCACCTCTACCATGAGCACATTGATCGGTCGAAGTTGTTGTGTAATGAATTCCAGCCAGTGATTGATGTACAAATCTGCCCAAAATGCTATGACATAAGGAATGTTTACGATTGCTCAAGGGAGAGATGCAAGATAAAGCAAGAGGAGCAAACACTGGGCGATTGTCGGGGTTGCATTTGTTGCGTTCCAAGGTGTGAAGAATGCGGTGGATGTGTCGATGATGATGAAATAGAAGAGGCTGTATGTGCAGGTATCTTGTGTTCAAGTTGCTGGCTTCAACTTCCTAAATGCAACCATTGTAATAGGTCATATTGCACGCGACACCGTCATAATATTGAAACTAGAAGCCCTTGTTTGCATTTTTTGTATCTTGCAAAAGAACGTTGCAAGGCAGGGCTGCAACAAGATATGCTTTGTTTGAACAGGGAAAATGTAAATCTTGCTGAAAGAAAGGAAAATTGTAAGCATATTCAAGTTTATAAGTTTGGCCTCTCAAATTATTGTGCAAGAACAGTCTGA 1083 45.8 MSENQEPPNPAATAGSSSSGVRMEAGPPHEALFLVLSYLPLFELLSMRAVCVSLRDAVEHDVLPWLHILVDRRLSSRLSDYTLGRIARKAGGRLRTLALINCFKISDSGLHEVVEKNPLLTKLYVPGCTSLTPAGVVRAVETLSQHSHNLKSLMIGGIYNIENQHLEVLKCHLFKNRSQQQQQERQHHHLYHEHIDRSKLLCNEFQPVIDVQICPKCYDIRNVYDCSRERCKIKQEEQTLGDCRGCICCVPRCEECGGCVDDDEIEEAVCAGILCSSCWLQLPKCNHCNRSYCTRHRHNIETRSPCLHFLYLAKERCKAGLQQDMLCLNRENVNLAERKENCKHIQVYKFGLSNYCARTV 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7234870 7237228 + ClCG01G006430.2 Cla01g00626 264215

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00626 360 Pfam F-box domain 28 63 IPR001810 GO:0005515
Cla01g00626 360 MobiDBLite consensus disorder prediction 1 20 - -
Cla01g00626 360 SUPERFAMILY F-box domain 28 76 IPR036047 GO:0005515
Cla01g00626 360 PANTHER MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B 22 312 - -
Cla01g00626 360 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 243 254 IPR017900 -
Cla01g00626 360 MobiDBLite consensus disorder prediction 1 23 - -
Cla01g00626 360 Gene3D Ribonuclease Inhibitor 27 205 IPR032675 -
Cla01g00626 360 PANTHER F-BOX PROTEIN SKIP28 22 312 - -
Cla01g00626 360 SUPERFAMILY RNI-like 93 170 - -
Cla01g00626 360 Coils Coil 318 338 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00626 - - - bhj:120092447 558.525
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00626 Cla-Chr1:7234870 Cla05g02631 Cla-Chr5:37502251 3.16E-40 dispersed
Cla01g00626 Cla-Chr1:7234870 Cla08g01701 Cla-Chr8:29601827 2.90E-49 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g477 Blo01g00768 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0378 Cone9ag0407 . . . . . . . . . Bpe02g01978 Bma01g00480 . . . Cmo15g01018 . Cma15g00971 . Car15g00918 Cpe13g00355 . Bhi12g00929 . . . . . . Cla01g00626 Cam01g0655 Cec01g0647 Cco01g0672 Clacu01g0643 Cmu01g0618 Cre09g1886 Lsi09g00677 . Chy09g00833 Cme09g01365
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013070 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00626 Cla_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.656714 0.0 0.0