Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00631 ATGGGAGACGTGAAGGACAAGGTCAAGGGTTTCATGAAAAGGTTTAATAATACGCTGTCCTCATCTTCTTCTTCGTCAAGTTTCAAGGGCCAGGGAAGAGTTTTAGGATCGTCTTCTTCTGGGTCGACTAGTTCTATGCCTACCCGCCCATCGCGGAATCCCATTTCAAAGCCGAACCCGGTTAATCCACCTTCAGATTCTAAGCCCCCGCTTGTGAATTCGATTGCCAATGGTCAAAACAGGTCAGACCTGTCGAATAAATCGAACCCAGATCGTAAACCGGCCGATGGATTTGACCCATTTGACTCGTTTATAACATCTGGGAAAAGATCTGGAAATGGGTATTCCTTAAATGTGTTTGAATGTCCGATTTGTGGCCAAAGTTACAGGTCTGAAGAAGAGGTTTCGGTGCACGCAGATAGCTGTGTCAACGATAGTACAGCCAAGGGAGCTGAAGATCCACCTACAAGTGATGCAGAATCTCGGAGTGAATTGGAGGCTTGTGTTGCCACTTTCTTATCCGGGAAGCCATCACAAGGTTCATTGGATATTGTTCTGAAGCTTTTGAGGAACATAGTTCGGGAACCAGAGAATTCAAAGTTTAGGAAAATTCGTCTGAGTAATCCCAAAATTAAGGAGGCAATTGGTGAGGCTGTGGGGGGAGTGGAATTGTTGGAGTTTGTAGGTTTTAAATTGCAAGAGGAAGATGGTGAAATGTGGGCAATCATGGACGTTCCAACAGAGGAAGAAATTAACCTATTAAGTAAGGTAATAGATTCGATTGACCGGCCAAAGCTTGATGAACAGCAAAAGAAAGCCAGCACTGCATCTGCACTGATTGAACCAAAGAAGGTAGACAGACAGATTCGGGTATTCTTTGCTGTCCCTGAAAACGTTGCAGCCAACATTGAACTACCAGACTCCTTCTACAAACTCTCTGTTGAAGAGGTTAAAAGAGAAGCTATAATGAGGAAGCAAAAGATTGCTGAATCTCAGCTTTTGGTTCCCAAATCATACAAGGAAAAACAGGCAAAAGCTGCTAGGAGGAAGTACACAAGAACAGTTATCAGAATTCAATTTCCCGACGGCGTGGTACTTCAAGGTGTTTTTTCTCCTTGGGAACCGACAATTGCGCTATATGAGTTTGTGAGCACAGCACTGAAAGAACCCGGCTTGGAATTCGAGTTGATACATCCTGTCGGTGTTAAGCGGCGTACAATCACTCATTTTCCCGCAGAAGGAGAGAGATCTAAAACACTAGATGATGAGGAGTTAGTTCCTTCAGCTCTGGTCAAGTTTAGACCAATTGAAACAGATTCAGTTGTCTTCACAGGTTTGCGTAACGAACTCCTTGAGATAATCGAACCACTCGTTAGCGGTTCAGCCGTGGCTCCTCCTGCACAAGTTTAA 1410 44.33 MGDVKDKVKGFMKRFNNTLSSSSSSSSFKGQGRVLGSSSSGSTSSMPTRPSRNPISKPNPVNPPSDSKPPLVNSIANGQNRSDLSNKSNPDRKPADGFDPFDSFITSGKRSGNGYSLNVFECPICGQSYRSEEEVSVHADSCVNDSTAKGAEDPPTSDAESRSELEACVATFLSGKPSQGSLDIVLKLLRNIVREPENSKFRKIRLSNPKIKEAIGEAVGGVELLEFVGFKLQEEDGEMWAIMDVPTEEEINLLSKVIDSIDRPKLDEQQKKASTASALIEPKKVDRQIRVFFAVPENVAANIELPDSFYKLSVEEVKREAIMRKQKIAESQLLVPKSYKEKQAKAARRKYTRTVIRIQFPDGVVLQGVFSPWEPTIALYEFVSTALKEPGLEFELIHPVGVKRRTITHFPAEGERSKTLDDEELVPSALVKFRPIETDSVVFTGLRNELLEIIEPLVSGSAVAPPAQV 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7299420 7303092 - ClCG01G006460.2 Cla01g00631 264220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00631 469 SMART ubx_3 346 435 IPR001012 GO:0005515
Cla01g00631 469 MobiDBLite consensus disorder prediction 53 67 - -
Cla01g00631 469 Gene3D - 343 435 - -
Cla01g00631 469 SUPERFAMILY Ubiquitin-like 320 433 IPR029071 -
Cla01g00631 469 Gene3D - 174 263 - -
Cla01g00631 469 Pfam UBX domain 350 429 IPR001012 GO:0005515
Cla01g00631 469 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 459 - -
Cla01g00631 469 Pfam PUB domain 179 250 IPR018997 -
Cla01g00631 469 CDD UBX_UBXN6 354 434 - -
Cla01g00631 469 SUPERFAMILY PUG domain-like 177 241 IPR036339 -
Cla01g00631 469 MobiDBLite consensus disorder prediction 68 85 - -
Cla01g00631 469 SMART PGNneu 180 247 - -
Cla01g00631 469 MobiDBLite consensus disorder prediction 15 52 - -
Cla01g00631 469 CDD PUB 167 263 - -
Cla01g00631 469 ProSiteProfiles UBX domain profile. 349 433 IPR001012 GO:0005515
Cla01g00631 469 MobiDBLite consensus disorder prediction 15 101 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00631 Cla-Chr1:7299420 Cla11g00654 Cla-Chr11:7557128 1.84E-09 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60376 PF00789 UBX 1.80E-05 CL0072 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00631 K14011 - csv:101209321 823.157