Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00638 ATGGCTGCTTCCAAGATAGCAATGGCTTCTCTATCGCTAACCCATTTCCGCCCATTATCCTCCGCCTCCATGCCCTCTCTTTCTCCTTCTTTCTCCTCCAGGCTGGTTGCTCATCCGCCGGACCTCATCAAGTGGGTCCGCAGAGAAGGCGGATTCGTCCACCACGCTCTGAACATAGCTCCCTCTCCCGATGCCCATACTGGCCTTGGACTTCTCGCTTCTGACCGCATTCCCAAAGGTTCTGAGCTTATTGTCCTTCCTCACAATCTTCCCTTGCGCTTTGAGTCCCTGGAAGCCGGCGATTCTGATGAGGCCGACTCCGTTCTTGTCAATTTGGCACGCCAAGTTCCTGGTATTGATCGTATTTTATCTGAAATACCTCAATTGAGCCGGTATTTGGCAGAGGAACTGTGGTCCATGAAATTGGGTTTGAAGCTTCTGTACGAAAGGGCAAAAGTTGGATCCTTCTGGTGGCCATATATTGGCAATCTTCCTGAAGTTTTCAGTGTTCCCATATTTTTTCCTGGAGATGATATAAAGAACTTGCAGTATGCTCCTCTTCTTTATCAGGTAAACAAAAGGTGTCGCTTCCTCCTTGATTTTGAGAAAGAAGTCAAACATACTCTTGACAGTATAAAGCCTGAAAATCACCCTTTTGGTGGCCAAACTGTAGATGCATCATCCCTTGGATGGGCAATGGCAGCGGTCTCGTCAAGGGCATTTCGTTTACATGGTAAAAATCTCACAGATGGTACTCCAAACAGTGTCCCCATGATGCTGCCTCTTATTGATATGTGCAATCATAGCTTTAATTCAAATGCTCGTATAATCCAGGAGCAGGATGCCTCCATGAAGTTGAAAGTGAAGGTTGTAGCAGAGACTGAAATTGAAGGAAACGCTCCTTTAACACTAAATTATGGCTGTCTGGACAATGATCTTTTCCTGCTTGATTATGGATTTGTGATACCATCGAATCAATATGATTACATTGAGCTAAAATATGATGAAGCTCTCTTAGAAGCTGCTAGCACTGTTGCAGGGATTTCTTCAGAAAATTTTTCTTCTCCTGCTCCATGGCAAAGACTTATATTAACCAAGTTAAATCTACACGGAGAAGCTGCTCTTCTCAAGGTGAGCATCGGTGGTTCAGAAATAGTCGACGGTCGCTTATTGGCTGGATTAAGAGTGCTGCTCTCAGTTGATGAAGAAACGGTACAGAAGCATGACTTGAGCGTGCTCAAATCATTATCAGCTGAAGCACCTCTTGGTGTTGCAAATGAAGTGGCTGCCTTACGTACGGTAATTGCTTTATGTGTGATTGCATTGGGACACTTCCCAACCAAGATTATGGAGGACGAAACCCTTTTGAAAAAGTGTGAAAACGAAACATCTAAATTGGCAATCCAGTTCAGACTTCAAAAGAAATCAGTTATCATAGATGTGATGAGCAACCTCACAAGAAGAGTGAAGTTACTTTCATCGAAAGCGGTCTCTCAGGATTAA 1503 44.24 MAASKIAMASLSLTHFRPLSSASMPSLSPSFSSRLVAHPPDLIKWVRREGGFVHHALNIAPSPDAHTGLGLLASDRIPKGSELIVLPHNLPLRFESLEAGDSDEADSVLVNLARQVPGIDRILSEIPQLSRYLAEELWSMKLGLKLLYERAKVGSFWWPYIGNLPEVFSVPIFFPGDDIKNLQYAPLLYQVNKRCRFLLDFEKEVKHTLDSIKPENHPFGGQTVDASSLGWAMAAVSSRAFRLHGKNLTDGTPNSVPMMLPLIDMCNHSFNSNARIIQEQDASMKLKVKVVAETEIEGNAPLTLNYGCLDNDLFLLDYGFVIPSNQYDYIELKYDEALLEAASTVAGISSENFSSPAPWQRLILTKLNLHGEAALLKVSIGGSEIVDGRLLAGLRVLLSVDEETVQKHDLSVLKSLSAEAPLGVANEVAALRTVIALCVIALGHFPTKIMEDETLLKKCENETSKLAIQFRLQKKSVIIDVMSNLTRRVKLLSSKAVSQD 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7380316 7385257 - ClCG01G006540.1 Cla01g00638 264227

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00638 500 Gene3D - 357 495 IPR036464 -
Cla01g00638 500 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 317 494 IPR036464 -
Cla01g00638 500 SUPERFAMILY SET domain 40 325 IPR046341 -
Cla01g00638 500 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 9 497 - -
Cla01g00638 500 ProSiteProfiles SET domain profile. 55 307 IPR001214 GO:0005515
Cla01g00638 500 Pfam Rubisco LSMT substrate-binding 374 477 IPR015353 -
Cla01g00638 500 SMART set_7 55 313 IPR001214 GO:0005515
Cla01g00638 500 Gene3D set domain protein methyltransferase, domain 1 13 320 - -
Cla01g00638 500 PANTHER F21J9.27 9 497 - -
Cla01g00638 500 CDD SET_LSMT 56 321 - -
Cla01g00638 500 Pfam SET domain 68 307 IPR001214 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00638 - - - csv:101210959 870.152
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00638 Cla-Chr1:7380316 Cla09g01967 Cla-Chr9:37269096 1.35E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g491 . . Bda01g01798 . . . . . . . . . . . . . Cpe01g01830 . . . . . . . . . . . . . . . . . Cone9ag0398 . . . . . . . . . Bpe02g01972 Bma01g00486 . . . . . . . . . . Bhi12g00940 . . . Hepe02g2622 . . Cla01g00638 Cam01g0666 Cec01g0658 Cco01g0684 Clacu01g0655 Cmu01g0628 Cre09g1877 Lsi09g00687 . . Cme09g01345
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008394 2 3 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60377 PF00856 SET 5.60E-08 No_clan Cla TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00638 Cla_Chr01 FPKM 12.673591 12.406715 12.144193 12.796159 17.878904 21.677248 18.227133 12.192518 16.197168 16.601925