Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00645 ATGGGAAAGACGATCGAGATTTACGGGTTCCGGCCAGAGGTGACCGTCGACGAGGTGAAGGAATTTCTCGAGAATCACACCGGAGATGGAACTGTATCGACGGTGAGGATTTCGAAACCCAAAGACGAAAAAGCTCGGTTCACATTCGCAACGGTCCGGTTCGGTAGCAAATTGGCGGCCGAGTACATAGTGGCGAAGGCGACAGCGGCGGAGAAGCAGTTGTGGTTCGGAGGTTGGTATCTGAAGGCCAGAGACGTGGAGAGGTCGGTGGCGCCGGCGAGAGGCGGCGGTGAAATGGAGAGAATGGAAGAGGTGAAGGGGCACCTAGGGAGCCTAATTTCGGAGGAAACAATGAGGGTAATTTGGGAAGGACAAAATTGGAGTGTGGAATTTGGAAATGGAGTTAGGAAATTATGCTTTTATTTGAGTTATGAACTTCATGACTACAAAATGGAGCTTTGTTTTCAGAATATTTTGAGTGTTGAGCTTCGTTGCCCTCTTAATCAACCTTCCAAGTTTTTTCTCATTCAGTTGCAAGGTGCTCCACGGATTTTCAAGAAGATACCATCGTCTTCTTCCTCTCGATTCTATTCCAAGGAATCCATTGGTTTCCGTTGGATGAGGGATGTCGATTTCACTCCATCTTCTTGCATTGGACAATCTTTTGCTATATGCTTGCAACTTTCTCCTGGACATCACCTTCCTCCTTTCTTCCAAACATTGGTTGGCTACAAAGAAACTTATGCTCCATTCATTCTCCAGACAGGTTCATCTTTCTCTTCCATTTCAAATCTGGTTCCTATCATTACGCCACCTCACGACTTTGATATCCCTTATGAAATTTTGTTCAAAATCAATAACCTAGTTCAACATGGTTATCTTCCTGGACCAACACTAGATGATGAATTCTTCCGATTGGTCGATCCAAGTAGATTTCGTCGTGACTTTGTCGAACATGCCCTAGAAAAACTATTTAATTTGAAGGAATGTTGCTATGAACCACAAAAATGGCTCAAGCACCAATATCTGTCATTTTATACTTCTAATCAACTTCCATGGAAAACTAATATTTCTTTGGATGATGGCCTGGTGTACGTGCATAGAGTTCAAATTACGCCATCTAAGGTGTACTTCCGTGGTCCGGAGGTCAATCTTTCTAACAGAGTAGTTCGTCGTTTTATTGATGATATAGATAATTTTCTCCGTGTGTCTTTAGTTGATGAAGAATTGGATAAACTTCATTCCATTGATCTATCTCTGCGTTCATCATCTGCTGAAAATAGTGAAAAGACTAAAGTTTATGATAGAATACTATCTATGTTAAGAAATGGTATAGTCATTGGTGATAAGAAGTTTGAGTTTCTGGCTTTCTCAGCTAGTCAATTAAGGGAAAATTCTTTTTGGATGTTTGCTTCGAGGGAAGGGCTTAGTGCAGTAGATATCAGAGAGTGGATGGGTGACTTTAGTCAGATAAGGAATGTGGCAAAATACGCTGCTCGACTCGGTCAATCTTTTGGCTCATCTAGAAAAACTTTGTGTGTTGAAGAACATGAAATTGAAGTTATTCCTGATGTAGAAGTTGAAAATAAAGAAAATATGTATTGTTTCTCCGATGGGATTGGAAAAATATCGAAAACGTTAGCTGAGAAGGTTGCTGAAAAATGTGGCTTGGTTAATCATACACCATCTGCCTTCCAGATTCGATATGCTGGATACAAAGGTGTTGTTGCTATCGATCCAACGTCAAAAAAGAAATTGTCATTACGAAAGAGTATGTTGAAGTATATGTCGCTCGATACGCAACTTGATGTTTTGTTATGGAGCAAGTATCAACCCTGTTTTCTTAACCGCCAGGTGATCAACCTTCTGTCAACTCTTGGAATTAAGGACGGTGTTTTTGTGAAAAAACAAAAGGAGGCTATAGATCAACTAGATTCTATTTTAGAAGATCCATCAAGAGCATTAGAAGTGTTGGAGTTGATGTCACCGGGAGAAATGACTTGTATTCTAAAGGAATTGCTTTTGTTTTACAAGCCAAACAAAGAGCCTTTTCTAAATATGATGCTACGAACATTTCGAGCAGATAAATTGTTAGATTTGAGGACTAAATCAAGAATATTTGTTCCTAAGGGAAGGACCATGATGGGTTGCCTGGATGAAACCCGAACACTAGAATATGGGCAGGTGTTTGTCCATTGCTCTGTTCCTGGAAGATCAAGCGAAAATAATTTTGTAGTTAAGGGTAAAGTGGTTGTTGCTAAAAATCCATGTTTACATCCGGGGGACGTGCGCGTGCTCGATGCCGTTGATGTGAAAGCTCTACATCATATGGTGGATTGTGTTGTTTTTCCACAAAAAGGGAAAAGACCTCATACAAATGAATGTTCTGGGAGTGATTTGGATGGTGACTTGTACTTTGTTTGTTGGGATCCGAAGCTGACTTGTATTAAACCAGTTAAACCTACGAGCTACAAGCCTGCACCAACTATGCAGTTGGACCATGATGTCACAATCGAGGAGGTGCAGGAATATTTTGCCAATTACATGGTGAATGATAGTCTTGGAGCCATTGCAAATGCTCACACTGTCTTTGCAGATAAGAATCCTAAGAAGGCAATGAGTGTTGAATGTATTAAACTTGCAAAATTGTTCTCCATTGCTGTTGACTTCCCGAAGACTGGCGTGCCAGCAAACTTGCCACGCAATCTTCGTGTCCATAAGTATCCAGATTTCATGGAGAAGCCTAATAAACAGACTTATGTATCAAATGGTGTTCTCGGGAAGCTTTTTCGAGGAGTGAAAGATGTTTCTTCTGATGTCAACACCCTTGAAAGCTTCACTAGGGAAGTTGCTACCAAGTGCTACGATCCAGACATGGAAGTAGATGGTTTTGAAAAGTATTTGAGAGAAGCTTCCGATTACAAAACCATATATGACTTCAAATTGGGGAACCTTATGGATTATTATGGTATCAAAACAGAACCTGAATTAGTAAGTGGAAATATCTTGAGAATGGGAAAGTCTTTTGATAAAAGGAATGACTTGGAACAAATTAATTGTGCCATGAAATCACTAAGAAAAGAGGTCAGGGCTTGGTTCAATGAGAAGGGAAGTAAGTCTACATATGACAACAACAAAGACGAAGATGAAGAATACGCAAAGGCATCTGCGTGGTACCATGTCACGTATCACCCAGATTATTGGGGTCGTTACAATGAAGGTATGCAAAGAGATCATTTTTTGAGTTTTCCCTGGTGTGTTGGTGACAAGCTTATTCAAATCAAAAGAGAGAAGACGTCATTGATGAATTCTTCACCAATAGATTGTGATGAGATGATCAGAAGGTTCGACATCTGTGTCCTTGAGTTCTAA 3372 40.51 MGKTIEIYGFRPEVTVDEVKEFLENHTGDGTVSTVRISKPKDEKARFTFATVRFGSKLAAEYIVAKATAAEKQLWFGGWYLKARDVERSVAPARGGGEMERMEEVKGHLGSLISEETMRVIWEGQNWSVEFGNGVRKLCFYLSYELHDYKMELCFQNILSVELRCPLNQPSKFFLIQLQGAPRIFKKIPSSSSSRFYSKESIGFRWMRDVDFTPSSCIGQSFAICLQLSPGHHLPPFFQTLVGYKETYAPFILQTGSSFSSISNLVPIITPPHDFDIPYEILFKINNLVQHGYLPGPTLDDEFFRLVDPSRFRRDFVEHALEKLFNLKECCYEPQKWLKHQYLSFYTSNQLPWKTNISLDDGLVYVHRVQITPSKVYFRGPEVNLSNRVVRRFIDDIDNFLRVSLVDEELDKLHSIDLSLRSSSAENSEKTKVYDRILSMLRNGIVIGDKKFEFLAFSASQLRENSFWMFASREGLSAVDIREWMGDFSQIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVENKENMYCFSDGIGKISKTLAEKVAEKCGLVNHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRKSMLKYMSLDTQLDVLLWSKYQPCFLNRQVINLLSTLGIKDGVFVKKQKEAIDQLDSILEDPSRALEVLELMSPGEMTCILKELLLFYKPNKEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCLDETRTLEYGQVFVHCSVPGRSSENNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKALHHMVDCVVFPQKGKRPHTNECSGSDLDGDLYFVCWDPKLTCIKPVKPTSYKPAPTMQLDHDVTIEEVQEYFANYMVNDSLGAIANAHTVFADKNPKKAMSVECIKLAKLFSIAVDFPKTGVPANLPRNLRVHKYPDFMEKPNKQTYVSNGVLGKLFRGVKDVSSDVNTLESFTREVATKCYDPDMEVDGFEKYLREASDYKTIYDFKLGNLMDYYGIKTEPELVSGNILRMGKSFDKRNDLEQINCAMKSLRKEVRAWFNEKGSKSTYDNNKDEDEEYAKASAWYHVTYHPDYWGRYNEGMQRDHFLSFPWCVGDKLIQIKREKTSLMNSSPIDCDEMIRRFDICVLEF 1123
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7433861 7439982 + ClCG01G006600.1 Cla01g00645 264234

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00645 1123 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 1118 IPR007855 GO:0003968
Cla01g00645 1123 Coils Coil 1015 1035 - -
Cla01g00645 1123 Pfam RNA dependent RNA polymerase 371 933 IPR007855 GO:0003968
Cla01g00645 1123 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 1118 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00645 K11699 RDR, RDRP; RNA-dependent RNA polymerase [EC:2.7.7.48] - csv:101205704 1913.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00630 Cla-Chr1:7290657 Cla01g00645 Cla-Chr1:7433861 0 dispersed
Cla01g00645 Cla-Chr1:7433861 Cla07g00513 Cla-Chr7:7546644 0 dispersed
Cla01g00645 Cla-Chr1:7433861 Cla03g01556 Cla-Chr3:31216610 2.43E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g507 . . . . . . . . . . . Cma04g00091 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda07g01742 . . . . . . . Cmo15g00938 . . . Car15g00840 Cpe13g00418 . Bhi12g00954 . . . Hepe02g2614 . Lcy10g1379 Cla01g00645 Cam01g0673 Cec01g0664 Cco01g0691 Clacu01g0661 Cmu01g0634 Cre09g1871 Lsi09g00694 . Chy09g00814 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003921 0 1 0 0 0 2 2 1 2 1 2 2 2 2 3 2 2 0 2 2 2 2 1 2 2 2 1 4 1 0 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00645 Cla_Chr01 FPKM 5.134575 6.203093 7.237988 9.810782 4.933506 3.88906 0.0 9.795156 9.062727 9.1054