Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00650 ATGTTTTTCGCCGCCGTCCCTCTCTCCATCCTCCTTTTCTTCTTCGCATCTCCTCCCTCTCTGGCTACCGCCCAACCCACGACAAACCCCCGCAATTTCTCCTCCTTCTCTATATCCCAATCCCCATGGCGGCCCACCCAGAATCTCATTCTCCTCTCCCCCAACTCTCATTTCGCCGCCGGCTTCCGCCCACTACCCAACAACTCCAATCTCTTCATCTTCTCCGTTTGGTACTTCAACATCTCAAAAGACAACGTCGTTTGGTCCGCCAACCGTCTTTCTCCGGTCAACCGTTCAGCGGCTCTGGCAATCACAGCCACCGGCCAGCTCCGTCTCACCGACGGCTCCGGTCCCAACCTCTGGCCTACCAACAGTCTTTCTGCGAATCCAAATTCGACCAAATTAATCCTTCGGAATGATGGTGATTTGATTTACGGCACGTGGGAAAGCTTCCAATTCCCCACCAATACTATCTTGCCTAATCAGACATTCAATGGAACCACCATTGTCTCCAACAACGGCAAATACGCGTTTGTAAACTCTGCTAATTTGACGTTTGGTGCAGAGAGTTATTGGACCTCAGGAAATCCTTTCCAGAGTTTCCTAATTGGAGGTCAAATCATCATAAACAATCAAATCCCAGTTACCCCTTCCGATTTTAACTCCACCCGTCTCCGGAAATTGGTTGTTGACGATGATGGGAACCTCAAGATTTTCAGCTTCAATCCCAATTCCCCACGGTGGGATGTGGTTTGGCAAGCACACGTAGAGTTGTGTCAAATCTTTGATACTTGCGGTCCAAATTCCGTCTGTATGAGTAGTGGCAGTTACAATTCCACTTACTGTGTCTGCGCTCCCGGATTCAGCCCCGATCCTCGCGGCGGAGCACGGCAAGGATGCCGCCGAAAACTCAACGTATCTAACGAACCCAAGTTTCTTCAACTGGATTTTGTGAGTTTCAGAGGTGGGGTTAAACAAATCTCCCTGCAAACCCCAAATATTTCAGTCTGTCAAGCGAATTGCTTAAAGAATTCGAGCTGCGTGGGCTATACATTCAGCTTCGACGGCAGTGCCCAGTGTGTGCTTCAGCTAGACAATTTGTCGAACGGGTTGTGGTCGCCAGGGATGAAGATAGCTGCCTTTGTGAAGGTCGACAATTCTGAAACAGATCGATCAAATTTCACCGGAATGATGTATAAGCTCCAAACCACATGTCCAGTTCGTATCACCCTCCGGCCGCCACCGGTAAATAAAGACAATACCACCAGAAACATATTGATAATCAGCACCATATTCATTGCCGAACTAATTACCGGGGCGGTTTTCTTCTGTGCATTCTTGAAGAGATTTGTAAAATACAGAGACATGGCTCGCACGCTTGGTCTCGAATCACTTCCCGCCGGCGGCCCGAAGCGGTTCAACTACGCCGAGCTAAAGACGGCCACAAACGACTTCTCAAACTGCATTGGAAGAGGCGGATTCGGCGAAGTCTTCAAAGGGGAACTGCCAGACAAACGCGTGGTGGCCGTCAAGTGCTTGAGAAACGTCGCTGGCGGCGACCGCGACTTTTGGGCGGAAGTCACCATCATCGCCAGGATGCACCATCTTAACTTGCTCCGACTGTGGGGATTTTGCGCAGAAAAGGGTCAAAGAATTTTAGTTTACGAGCATATCCCCAATGGATCGCTCGACAAATTCCTCTTCGTCAAAACTTCACCTCCCAATTCGGAGGACGGAACAGAGACGGAAGAACAAAGCCCGTCCCTTGATTGGAGCATTCGTTACCGAATCGCCATTGGAGTAGCAAGAGCAATCGCATACTTGCACGAGGAATGCCTGGAATGGGTGTTGCATCGAGACATAAAACCGGAAAACATCCTTCTGGATAACGATTTCTGCCCAAAGCTATCGGATTTCGGGCTGTCGAAACTGAGAAAAAACGAGGAGACGGCGGTGAGTATGTCTCGGATCAGAGGGACGCCCGGTTACGTGGCGCCGGAGCTGGTGAAATTGGGTTCGAATTCGATAACGACGAAGGCGGATGTGTACAGTTTCGGGATGGTGCTGCTGGAGATAATCAGTGGGACAAGGAATTTCGAGATAAAGAGATCGACGGTTGAAAGCGCGGATTGGTACTTCCCGGGATGGGCGTTTGAAAAGGCGTTCGTGGAGGAGAAGATGAAGGAGATTTTAGACGGTCGGATAAGGGATGAATACGAGAGCGGAGGGCATTTGGCGATTGTTAATCGGATGGTGCAGACGGCGATGTGGTGTCTTCAAAACCAACCGGAGAAGAGACCGTCGATGGGGAAGGTGGTGAAGATGTTGGAAGGGAAGCTTGAAATTCCTCCTCCAGAAAAGCCCTCTATTTACTTCTTGTCTGAACCAAGTTAA 2394 49.87 MFFAAVPLSILLFFFASPPSLATAQPTTNPRNFSSFSISQSPWRPTQNLILLSPNSHFAAGFRPLPNNSNLFIFSVWYFNISKDNVVWSANRLSPVNRSAALAITATGQLRLTDGSGPNLWPTNSLSANPNSTKLILRNDGDLIYGTWESFQFPTNTILPNQTFNGTTIVSNNGKYAFVNSANLTFGAESYWTSGNPFQSFLIGGQIIINNQIPVTPSDFNSTRLRKLVVDDDGNLKIFSFNPNSPRWDVVWQAHVELCQIFDTCGPNSVCMSSGSYNSTYCVCAPGFSPDPRGGARQGCRRKLNVSNEPKFLQLDFVSFRGGVKQISLQTPNISVCQANCLKNSSCVGYTFSFDGSAQCVLQLDNLSNGLWSPGMKIAAFVKVDNSETDRSNFTGMMYKLQTTCPVRITLRPPPVNKDNTTRNILIISTIFIAELITGAVFFCAFLKRFVKYRDMARTLGLESLPAGGPKRFNYAELKTATNDFSNCIGRGGFGEVFKGELPDKRVVAVKCLRNVAGGDRDFWAEVTIIARMHHLNLLRLWGFCAEKGQRILVYEHIPNGSLDKFLFVKTSPPNSEDGTETEEQSPSLDWSIRYRIAIGVARAIAYLHEECLEWVLHRDIKPENILLDNDFCPKLSDFGLSKLRKNEETAVSMSRIRGTPGYVAPELVKLGSNSITTKADVYSFGMVLLEIISGTRNFEIKRSTVESADWYFPGWAFEKAFVEEKMKEILDGRIRDEYESGGHLAIVNRMVQTAMWCLQNQPEKRPSMGKVVKMLEGKLEIPPPEKPSIYFLSEPS 797
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7541016 7543409 - ClCG01G006670.1 Cla01g00650 264239

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00650 797 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 196 IPR036426 -
Cla01g00650 797 CDD B_lectin 51 154 IPR001480 -
Cla01g00650 797 Gene3D - 41 157 IPR036426 -
Cla01g00650 797 ProSiteProfiles Bulb-type lectin domain profile. 36 158 IPR001480 -
Cla01g00650 797 Pfam S-locus glycoprotein domain 213 290 IPR000858 GO:0048544
Cla01g00650 797 CDD STKc_IRAK 489 778 - -
Cla01g00650 797 SMART serkin_6 483 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00650 797 ProSiteProfiles EGF-like domain profile. 255 291 IPR000742 -
Cla01g00650 797 Pfam D-mannose binding lectin 86 165 IPR001480 -
Cla01g00650 797 SMART blect_4 47 154 IPR001480 -
Cla01g00650 797 ProSitePatterns Serine/Threonine protein kinases active-site signature. 616 628 IPR008271 GO:0004672|GO:0006468
Cla01g00650 797 ProSitePatterns Protein kinases ATP-binding region signature. 489 511 IPR017441 GO:0005524
Cla01g00650 797 PANTHER OS07G0415500 PROTEIN 13 795 - -
Cla01g00650 797 Pfam Protein kinase domain 488 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00650 797 Gene3D Phosphorylase Kinase; domain 1 453 557 - -
Cla01g00650 797 Pfam PAN-like domain 311 369 IPR003609 -
Cla01g00650 797 ProSiteProfiles PAN/Apple domain profile. 300 391 IPR003609 -
Cla01g00650 797 PANTHER OS10G0101000 PROTEIN 13 795 - -
Cla01g00650 797 SUPERFAMILY Protein kinase-like (PK-like) 466 777 IPR011009 -
Cla01g00650 797 Gene3D Transferase(Phosphotransferase) domain 1 558 782 - -
Cla01g00650 797 ProSiteProfiles Protein kinase domain profile. 483 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00650 797 PIRSF SRK 1 193 IPR024171 GO:0004674
Cla01g00650 797 PIRSF SRK 180 797 IPR024171 GO:0004674
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00650 - - - csv:101221701 1459.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00650 Cla-Chr1:7541016 Cla10g02040 Cla-Chr10:36138247 6.62E-109 dispersed
Cla01g00648 Cla-Chr1:7517401 Cla01g00650 Cla-Chr1:7541016 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g528 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0729 . . . Csa05g01971 . . . . . . . . . . . . Cmo15g00931 . Cma15g00892 . Car15g00838 Cpe13g00425 . Bhi12g00960 . . . . . Lcy10g1599 Cla01g00650 . . . . . . Lsi09g00703 . Chy09g00808 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003119 0 2 1 0 0 2 2 2 3 2 2 2 2 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2 2 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80246 PF00069 Pkinase 2.80E-45 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00650 Cla_Chr01 FPKM 22.190033 21.184862 48.310848 50.393295 114.632278 113.168633 113.607513 65.395393 62.42635 62.704536