Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00652 ATGGCTCTCCCTCCGGTTGAGTGTATGTATGTCGTAGAAAGCAATATTCGAGAATGGAAGTCTGGAAACTCGAGCTTTAGGGTTCCTCAACCTGTCCCCGTGGTTCGCTTCCTCTACGAGCTCTGCTGGACCATGGTCCGAGGCGAATTGCCATTCCAGAAGTGTAAAGCAGCATTGGATTCAGTTGAGTTCTCGGACAAAATGTCTGCGGAGGAGTTAGGATCAACTTTTGCTGATGTCATTACCCAATTGGCTCAAGATATCACATTAGCGGGAGAGTATCGTGCTCGTCTTTTAAAATTGGCTAAGTGGCTGGTTGAATCTGCATTTGTCCCATTGAGGCTTTTTCAGGAGCGATGCGAGGAAGAATTTCTATGGGAGGCTGAAATGATAAAGATTAAGGCGCAAGAACTGAAAAATAAAGAGGTCAGAGTAAATACTCGTCTTCTTTATCAGCAAACAAAGTTTAATCTTCTGCGGGAGGAAAGTGAGGGCTATGCCAAGTTGGAAGATAGGCCATTGAGGAATAAACCCTTTTGCTTTGCTTTTGCTTTGTCAGTGAAGAATGTTTTGGTGGCTGACGTTTTGGCTCAGCCTACTCCCACTCTGGGGTTCTGTTGTTCTTGTCAATTAGCAATATTTGAAGAGTTCAAAGATATAGAAGGATTGGCTGTGATTGGAGGAAGATGTGTAACACTTCTTTGCCGGGTCACTGATGCTTCAAATAATAATTTTCCAGGTTCAACAATTGGTATTATAAAGTCATTGATTGGGCATTTTGATCTGGACCCAAACCGTGTTTTTGACATTGTCTTGGAGTGTTTTGAACTGCAGCCAGAAAATAGTGTTTTTGTGGAGCTAATTCCAATATTTCCCAAGTCTCATGCTTCACAAATCCTCGGGTTCAAATTTCAGTATTATCAGCGTATTGAAGTAAATTCGCCAGTTCCATTTGGACTTTATAAGCTTACAGCGTTACTAGTGAAGGAAAAGTTTATTGATCTTGACAGCATATATGCACATCTACTTCCCAAGGAGGATGAGGCATTTGAGCATTATGGTTCCTTTTCATCCAAACGACTTGATGAGGCTACCAGAATAGGTAAAATAAATCTTGCGGCAACTGGAAAGGATCTAATGGATGACGAAAAGCAAGGAGATGTAAGCATTGATCTTTTTGCTGCTCTAGACATGGAAAGTGAGGCAGTCAATGAAAGGTCTCCAGAGCTGGAAAATAATCAAACATTGGGCTTGCTTACTGGATTTCTTTCTGTGGGTGACTGGTGTCATGCACATGTACTGTTGGATCGGCTTTCACCTCTTAATCCAGTGGAACATCTTCCCATTTGTAACAGCTTGTTTAGGCTCATTGAAGAATCAATCTCCTCTGCATACTCTATTGTTCGTCAGAATCCTTATCAGAGCTTGGGGGTTTCTTCGGGAACTAGCATTGATACTATTGATACCGCAAATTTGCCAGTTGGTGGTTCTTTTATAGATCTTCCGAGAGAACTTTTCCAGATGCTTGCTGCTGCTGGACCTTATCTCTATCGCGATACAATTCTGCTACAGAAGGTTTGTAGGGTGCTGAGAGGTTATTATTCATCGGCAATTGAGTTTGTCAACAGTGTGGAAAGTGGTCCAAATCCTGAACTTGTTATGCCAGCTGGAAATCGGGTCCCTCATCTTCACTTAAAGGAAGCTAGGTTGAGGATTGAGGAAGCCTTAGGAACGTGCCTACTTCCTTCTTTACAGTTGATACCTGCCAATCCAGCTGTTGGTCAAGGAATATGGGAAGTAATGAATCTTCTTCCATATGAGGTGCGATATCGTTTATATGGTGAATGGGAGAGAGATGATGAGAAGATTCCAATGGTTTTGGCTGCAAGGCAAACGGCAAAGTTGGACACACGGAGGATTTTAAAGCGGTTGGCTAAGGAGAACTTGAAGCAATTGGGTAGGATGGTTGCAAAACTTGCGCATGCTAATCCAATGACTGTCCTTCGGACAATCGTACACCAGATTGAGGCATATAGGGATATGATTACTCCGGTGGTAGATGCATTCAAGTATCTGACTCAGCTTGAGTATGACATATTGGAATATGTTGTGATTGAGCGTTTGGCGCAAGGAGGGCGTGATAAGTTGAAGGATGATGGCCTCAATCTCTCAGATTGGCTCCAATCATTAGCTTCATTTTGGGGTCACCTGTGCTTGCTAATCGGTTATCATTTTCTATTGTTGCTTTTGCATGCATCACTGTCTGAGTTTTTCATGATATTTGTCCTCGGTTATACCTGGAATGCCGCACTTCAATATCCAGATCTATTCAACTACTTAAGCTTGCTTCCTGGGATATATTCTGTGAACTACATACATGGCTTTTGGGGGCCGCAGCTATATGATGAAATATTTCAATTGGGTTATGACAGTCACTTGACCATCGAGATTGAAGTTGGGTTTCAATTTCCTTCTCAAGTTCATGATAATATAGTAGATTGGGAGAGAATTGGAGGAGCAACTGAACAGAAACTGAGTAGGATCAATCAGAAGTTCTGTGCTGCTATCTTTTATTCGAGCTTCTTATTGGAGTCCTTAATGCAGATCAAAAACTTCTTGCCTTTGCAGATATTTGGCACTTTTGTCTTCCACAGGTGTAAGAAGTACCCATCTATGGAACTAAGGGGTTTGTTTCAGTATCTCGTTAATCAGTTGAAAAAAGGTCAAGGGATTGAGCTTGTTCTCCTGCAGGAACTTGTCCAACAAATGGCTAATGTCCAATACACAGAAAACCTAACTGAGGAGCAGTTGGATGCTATGGCCGGAAGTGAGACACTTCGTTTTCAAGCAACTTCTTTTGGAGTTACTCGAAATAACAAGGCGTTGATCAAGTCAAGCAACAGACTGCGTGACTCGTTGCTTCCTAAAGATGAACCAAAATTGGCAGCCCCTCTTTTGCTACTTATTGCTCAACACCGTTCATTGGTTGTTATAAATGCAGATGCTCCTTATATAAAGATGGTCAGTGAGCAGTTTGATAGATGTCATGGAACTTTGCTTCAATACGTGGAATTTCTTAGTAGTGCAGTTACACCTGCTTCGGCTTATGCTCAGTTGATTCCCTCACTCAACGAGCTTGCCCATCTTTATCACCTAGATCCCGAGGTTGCTTTCCTGATTTATCGGCCAATAATGAGGCTATTTAAGTGTCAGGGTGGTTCTGATATCTTCTGGCCACTGGATGGAAATGATGCAAATGTTGTAGGCAATAATTCTGATCTAGAACCTGCAGAATGTTCTGCTGATGTCGTTTTGGAACTTGGTTCTTTACAGAAACCTGTGAGGTGGTCAGATCTGCTTGATACTGTGAAGTCTATGTTACCTCCAAAAGCTTGGAATAGCTTATCTCCAGATCTCTATACTACATTTTGGGGTCTCACTCTCTATGATCTTTATGTTCCTCGGAGTAGATATGAATCTGAAATTGCTAAGCAGCATTCTGCTCTTAAAGCTTTAGAAGAGCTCTCTGATAACTCAAGTTCTGCAATCAACAAAAGGAAGAAAGACAAAGAAAGAATTCAAGAATCTCTTGATCGCCTGTCCAATGAACTTGTTAAGCATGAAGAAAATGTTGCATCCGTTCGTAGACGACTTTCTCGTGAAAAGGATAAGTGGTTGAGCTCCTGTCCTGATACTCTGAAAATCAACATGGAGTTCCTTCAGCGTTGTATTTTTCCCCGCTGTACATTCAGTATGCCTGACGCAGTCTACTGTGCTATGTTTGTGCATACTCTTCATTCCCTTGGAACACCATTTTTCAATACAGTCAACCATATTGATGTTTTGATATGTAAAACCTTGCAACCCATGATATGCTGCTGTACAGAATATGAAGCAGGCAGGCTTGGAAGGTTTTTATATGAGACACTAAAGATAGCTTATCATTGGAAGAGTGATGAATCCATTTATGAACGTGAATGTGGAAATATGCCTGGATTCGCCGTCTATTATAGGTATCCAAATAGCCAAAGGGTAACGTACGGCCAGTTCATCAAGGTTCATTGGAAGTGGAGTCAAAGAATTACACGGTTACTGATACAGTGCTTGGAATCTACAGAATACATGGAAATTAGAAATGCTCTTATAATGTTAACAAAAATTTCCAATGTGTTTCCCGTCACTAGAAAGAGTGGGATCAACCTTGAGAAACGGGTTGCTAAGATCAAAAGCGATGAAAGAGAAGATCTGAAGGTTTTAGCTACTGGCGTTGCAGCAGCCTTGGCTGCTAGAAAGCCTTCTTGGGTTACAGATGAAGAATTTGGCATGGGTTACCTTGAATTAAAGACTGCACCACCTCTTGCATCAAAGCCTTCGGCTAGTAATTTAGCTGCTAGCCAAAATAATTCCATTTATCTTTCCCAAAATGAACCTGGTGGAGGGAAGACCACTACATTACCCATCCCAAATTCAGATTCTGGAAATTTGGCCAAAGACCATTCATCAAGGTCAAGGACTTCTGATGTGAGAACGGATAAAATAGATGGTCTCTCTGTTCCAAAATCTGAGCTCGGGCATGGGAAACTCAAAGGCACATCATTGAATGGGCCAGATTCCCAGCCACTGGTGCCCTCAACTTCTGTGAATTCAGGATCGTTAAGAATGGTGGAAAGTCAGAAACCAGGTGATGACTTAAGTAGGACTTTGGATGAGGGCTCATCAAAAGTTGTTCCAAAGTCCTCTTCTGAATCTGAGTTAAGAGTTTCAGCAAAACGATCAGCGCCTGTTGCGTCTCTCAATAAAGCACCAAAACAAGATATCACTAAAGATGAAATAAGATCAGGAAAAGCTGCTAGCAAGAATCCTGGGTCTTCAACAAGTGAAAGGGAGCTTCCAGTTCATGCAACAGACGGTGGTAGGCATGGAAGTTCTTCCAATGCACCTTCTTCCGTTATGCCAAATGGTAATACACAAAGTTCATTAACTAAAGGCTCGTCCTTATTAAAAGCTTCAGATGGCCACACTGTTGAATCGAAGACAGAGAGTGGGGTTGGGAGGACATCTGATGGTAGGGCTTCATCAGTAAAGGATGATGGCACAGAAGCTCTTGATGTTACGAGATCCTCTTCTTCCAGACTTGCTCATTCTCCCAGGCATGATAATTCTGCCAGTGGTTCTAGATCTAGTGATAAGCTGCAGAAAAGAGCTAGTCCTGCAGAAGAACCAGACAGACAAGGTAAACGCCGCAAAGGAGATGGTGAAATTAGGGATGTAGATGGGGATTTTCGTATCTCTGACAAAGATAGATCCATTGACCCACGATCTGTAGATGCTGATAAATTAGGAACGGATGAACTAAGTGGTTACAGAGGTTCAGATAAACCTTCGGATAGAACAAAAGATAAAGTAAATGAAAGGTATGATAGGGACTACAGAGACCGGGTTGAGCGCCCTGAAAAGTCCCGTGGAGATGACCCTTCAGTAGAAAAAACAAGAGACAGATCAATAGAAAGATATGGAAGAGAGCGCTCAGTTGAGAAAGTGGAGAGAGTTTCTGATAGGTATCCTGAAAAGTCTAAGGATGAGAGAAATAAAGATGATAGGAGCAAATTACGATATAGTGATTCAACTATGGACAAGTCTCATGTTGATGATCGGTTTCACGGACAGAGCTTGCCACCTCCGCCACCCTTGCCTCCGCACATGGTCCCTCAATCTGTTAATAGTGGGAGAAGAGAAGAAGATGTGGATAGGAGGTTTGGAACTACTAGACATGCTCAAAGGCTTTCTCCTAGACACGAAGAGAAGGAACGAAGACGATCAGAGGAAAATTTAATTTCACAGGATGATGCAAAACGCAGAAGAGAAGAGGAATTTCGAGAAAGGAAGAGAGAAGAGAGAGACGCTGGGATGTCATTGAAGGTGGATGACAGGGAGAGGGAGAGGGAGAAGGCAAACCTTTTGAAGGAGGACATGGATGCTTCTGCTGCCTCTAAGAGGCGAAAACTTAAAAGGGAGCATCTGTCATTAGCTGAGGCTGGTGAGTATTCTCCTGTTGGTCCACCACCACCTTCGATGGGTGGTGGTGTGTCTCAATCTTATGATGGTCGAGAAAGAGGAGACCGAAAGGGAGTAATGATGCAGCGTGCTGGTTACCTGGATGACCCAGGCTTGAGAATTCACGGTAAAGAAGTGGTCAACAAGATGACAAGACGTGAAGCTGATCTAATGTATGATCGAGAATGGGATGACGAAAAGAGAATGAGAGCAGATCAGAAGCGTAGGCATCGGAAATAA 6294 42.53 MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALDSVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLKLAKWLVESAFVPLRLFQERCEEEFLWEAEMIKIKAQELKNKEVRVNTRLLYQQTKFNLLREESEGYAKLEDRPLRNKPFCFAFALSVKNVLVADVLAQPTPTLGFCCSCQLAIFEEFKDIEGLAVIGGRCVTLLCRVTDASNNNFPGSTIGIIKSLIGHFDLDPNRVFDIVLECFELQPENSVFVELIPIFPKSHASQILGFKFQYYQRIEVNSPVPFGLYKLTALLVKEKFIDLDSIYAHLLPKEDEAFEHYGSFSSKRLDEATRIGKINLAATGKDLMDDEKQGDVSIDLFAALDMESEAVNERSPELENNQTLGLLTGFLSVGDWCHAHVLLDRLSPLNPVEHLPICNSLFRLIEESISSAYSIVRQNPYQSLGVSSGTSIDTIDTANLPVGGSFIDLPRELFQMLAAAGPYLYRDTILLQKVCRVLRGYYSSAIEFVNSVESGPNPELVMPAGNRVPHLHLKEARLRIEEALGTCLLPSLQLIPANPAVGQGIWEVMNLLPYEVRYRLYGEWERDDEKIPMVLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANPMTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLAQGGRDKLKDDGLNLSDWLQSLASFWGHLCLLIGYHFLLLLLHASLSEFFMIFVLGYTWNAALQYPDLFNYLSLLPGIYSVNYIHGFWGPQLYDEIFQLGYDSHLTIEIEVGFQFPSQVHDNIVDWERIGGATEQKLSRINQKFCAAIFYSSFLLESLMQIKNFLPLQIFGTFVFHRCKKYPSMELRGLFQYLVNQLKKGQGIELVLLQELVQQMANVQYTENLTEEQLDAMAGSETLRFQATSFGVTRNNKALIKSSNRLRDSLLPKDEPKLAAPLLLLIAQHRSLVVINADAPYIKMVSEQFDRCHGTLLQYVEFLSSAVTPASAYAQLIPSLNELAHLYHLDPEVAFLIYRPIMRLFKCQGGSDIFWPLDGNDANVVGNNSDLEPAECSADVVLELGSLQKPVRWSDLLDTVKSMLPPKAWNSLSPDLYTTFWGLTLYDLYVPRSRYESEIAKQHSALKALEELSDNSSSAINKRKKDKERIQESLDRLSNELVKHEENVASVRRRLSREKDKWLSSCPDTLKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPMICCCTEYEAGRLGRFLYETLKIAYHWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQFIKVHWKWSQRITRLLIQCLESTEYMEIRNALIMLTKISNVFPVTRKSGINLEKRVAKIKSDEREDLKVLATGVAAALAARKPSWVTDEEFGMGYLELKTAPPLASKPSASNLAASQNNSIYLSQNEPGGGKTTTLPIPNSDSGNLAKDHSSRSRTSDVRTDKIDGLSVPKSELGHGKLKGTSLNGPDSQPLVPSTSVNSGSLRMVESQKPGDDLSRTLDEGSSKVVPKSSSESELRVSAKRSAPVASLNKAPKQDITKDEIRSGKAASKNPGSSTSERELPVHATDGGRHGSSSNAPSSVMPNGNTQSSLTKGSSLLKASDGHTVESKTESGVGRTSDGRASSVKDDGTEALDVTRSSSSRLAHSPRHDNSASGSRSSDKLQKRASPAEEPDRQGKRRKGDGEIRDVDGDFRISDKDRSIDPRSVDADKLGTDELSGYRGSDKPSDRTKDKVNERYDRDYRDRVERPEKSRGDDPSVEKTRDRSIERYGRERSVEKVERVSDRYPEKSKDERNKDDRSKLRYSDSTMDKSHVDDRFHGQSLPPPPPLPPHMVPQSVNSGRREEDVDRRFGTTRHAQRLSPRHEEKERRRSEENLISQDDAKRRREEEFRERKREERDAGMSLKVDDREREREKANLLKEDMDASAASKRRKLKREHLSLAEAGEYSPVGPPPPSMGGGVSQSYDGRERGDRKGVMMQRAGYLDDPGLRIHGKEVVNKMTRREADLMYDREWDDEKRMRADQKRRHRK 2097
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7559368 7584998 - ClCG01G006690.1 Cla01g00652 264241

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00652 2097 Coils Coil 1155 1175 - -
Cla01g00652 2097 Pfam Transcription- and export-related complex subunit 656 731 IPR021726 -
Cla01g00652 2097 PANTHER THO COMPLEX SUBUNIT 2 9 738 - -
Cla01g00652 2097 MobiDBLite consensus disorder prediction 1907 2010 - -
Cla01g00652 2097 MobiDBLite consensus disorder prediction 2071 2097 - -
Cla01g00652 2097 MobiDBLite consensus disorder prediction 1471 1496 - -
Cla01g00652 2097 PANTHER THO2 PROTEIN 880 2004 IPR040007 GO:0000347|GO:0006397|GO:0006406
Cla01g00652 2097 PANTHER THO2 PROTEIN 9 738 IPR040007 GO:0000347|GO:0006397|GO:0006406
Cla01g00652 2097 MobiDBLite consensus disorder prediction 2071 2089 - -
Cla01g00652 2097 MobiDBLite consensus disorder prediction 1638 1688 - -
Cla01g00652 2097 Pfam THO complex subunit 2 N-terminus 490 654 IPR032302 -
Cla01g00652 2097 Pfam THO complex subunit 2 N-terminus 37 475 IPR032302 -
Cla01g00652 2097 Coils Coil 1183 1224 - -
Cla01g00652 2097 PANTHER THO COMPLEX SUBUNIT 2 880 2004 - -
Cla01g00652 2097 MobiDBLite consensus disorder prediction 1471 2039 - -
Cla01g00652 2097 MobiDBLite consensus disorder prediction 1572 1587 - -
Cla01g00652 2097 MobiDBLite consensus disorder prediction 1703 1731 - -
Cla01g00652 2097 MobiDBLite consensus disorder prediction 1732 1886 - -
Cla01g00652 2097 MobiDBLite consensus disorder prediction 1532 1555 - -
Cla01g00652 2097 MobiDBLite consensus disorder prediction 1497 1518 - -
Cla01g00652 2097 Pfam Transcription factor/nuclear export subunit protein 2 1132 1426 IPR021418 -
Cla01g00652 2097 Coils Coil 1947 1967 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00652 K12879 THOC2; THO complex subunit 2 - csv:101221461 2171.36
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g529 . Blo16g00765 . Bda11g00196 Bpe13g00998 . . . . . . . . . . . Cpe01g01856 . . . . . . . . . . . . . . . . . . . Csa05g01969 . . . . . Bda11g00196 . . . Bma06g01140 . Cmo04g02231 Cmo15g00928 Cma04g02138 Cma15g00890 Car04g02075 Car15g00836 Cpe13g00426 . Bhi12g00962 . . . . . Lcy10g1597 Cla01g00652 Cam01g0681 Cec01g0674 Cco01g0701 Clacu01g0669 Cmu01g0642 Cre09g1863 Lsi09g00705 . Chy09g00805 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005299 1 1 2 1 1 1 2 1 1 1 1 1 3 1 1 3 1 2 2 1 2 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00652 Cla_Chr01 FPKM 11.253148 10.859818 15.598346 16.702492 31.145071 30.057411 30.147966 17.917122 18.897699 18.360781