Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00653 ATGAGGGAACCCCATTTGGGTTTTGGGGTTTTTCTCTTGGTTTTCCCCTTGTTTCTGCAGTTTGTGGGGTTCTCTGTTTACGCTCAGACATCCGGCGGTGGGGGTGATGGGTCAGTGATGAATCTCTTGAAGAATAGTATTGGAGCACCTAGTTCCCTTGGATGGACTGGTTCAGATTACTGTCAATGGAAGCATGTTAAATGCGATTCTCAGAACCGAGTTGTCAAAATTCAAGTTGGGAATCAAAATCTCAAGGGATCACTTCCGGCGGAACTCTCTAGCCTCTCGGCGTTAGTGCAATTAGAGGTACAGAGCAACCAGCTCGGTGGGCCGTTCCCTAATCTTGCCGATTCTCTGCAGATACTTCTAGCGCATGATAATCTTTTTACTTCCATGCCGAGTGATTTCTTCGCGAAGAAGTCGGCTCTGCAAACGATAGATATCGACAACAATCCCTTCTCGGCGTGGCGAATTCCTGATAACATTCGAGACGCATCTGGGCTACAAGAAATATCGGCCAATCGGGTTAATATAACTGGTACAATCCCTGAAGTGTTCGATGGCTCTACGTTTCCGACTCTTAGGAACTTGCATTTGGCGGGTAATTTTCTTGAAGGTGGATTACCAGCAAGCCTTGCAGGTTCTTCGATTCAGTCGCTTTGGTTGAATGGACAACAGAGTAGCTCTAAGTTAAACGGTTCAATCGCCATATTGCAAAATATGACTAATCTGCAGGAGGTTTGGTTGCATTTGAACCAGTTTTCAGGTCCTTTGCCGGATTTCTCTAACCTTCAGGAATTAGTGAACTTGAGTTTGAGGGATAATCAGCTTACGGGTATTGTTCCTTCATCCTTGGTAAATTTGAAATCACTCATGGTTGTGAATTTGACGAATAATATGCTTCAAGGACCAACCCCTGCTTTTAATCCTAATGTTCAGCTGGATATGAGACCAAGATCGAACAACTTTTGCTTGGATTCTCCGGGTGAACCATGTGATCCCCGCGTGAATGCTTTGTTATCGGTTGCACAGTCAATGGGTTTTCCCACAGCCTTTGCCCAAGGCTGGGAAGGGAACAATCCTTGTGAGAATTTCAAAGGTGTTACATGTACTGGCAACCCTGAAAACATAACTATAATTAACTTCAAGAATATGGGTCTTGCGGGCTCTATTTCTCCTAGCTTTTCATTGCTTACATCTGTTCAAAAGTTGATTCTCTCTAACAATTTTCTATCTGGCACAATACCAAACGAACTTGTGAATATGCCTAGTCTTACAGAATTAGATGTCTCCAATAATAGGCTTCACGGAAAAGTCCCAGCCTTCCGGAAAAATGTGATTGTGAACACTGATGGGAACCCGGATATCGGGAAAGATAGTGCCAGTGCTCCCGCACCAGGTTCACCAACTGGGACATCGCCCTCCGGTGGATCGGGTGACGTATCTGATAAAGGTGGTAAGAAAAGTAATACTGGGGCGGTTGTTGGTTCAATAATTGGTGTTATTGTTGGTCTCCTTCTTGTTGGGACTGTGATTTTCTTTTTATACAAGAGAAAGAAGAGGCATGGTAGTAGAGTGCAGAGTCCAAATACAGTTGTGGTACATCCTAGTCATTCTGGGGACCAAAATTCGGTGAAGATTACGATTACGGAGGCTAGAGCTGATGGGAGTGCACCTGAAACCAGCAGAGTTCCTATTGCTGGACCTAGCGATGTACATGTGGTTGAGGCAGGAAACCTGGTTATCTCAATTCAAGTTTTAAGGAATGTAACTAATAATTTTAGCCCTGAAAATATATTGGGGAAAGGGGGTTTTGGAACTGTTTACAAGGGAGAATTGCATGATGGTACAAAGATTGCTGTGAAGAGAATGGAGTCTGGAGTCATAGGTGAGAAGGGTTTGAATGAATTCAAGGCTGAGATTGCTGTTCTTACTAAGGTTCGTCATAGAAATTTGGTTGCGCTTCTTGGGTATTGCTTGGACGGAAATGAGCGGCTTCTCGTTTACGAATACATGCCCCAGGGGACGTTTAGTAGGTTTCTATTTCACTGGAAAGAAGAAGGGATTAAACCTCTTGAATGGAAAAGAAGGCTGATTGTTGTCTTGGATGTGGCCAGAGGTGTTGAGTACTTACATAGTTTAGCACATCAAAGCTTTATCCATCGCGATCTTAAGCCATCAAATATTCTTCTCGGAGATGATTTGCGGGCTAAAGTAGCTGACTTTGGGTTGGTTCGTCTTGCTCCTGAAGGGAAAGCGTCAATTGAAACGAGACTTGCAGGAACATTTGGCTATCTTGCCCCTGAATATGCAGCAGTAACTGGACGAGTTACGACCAAGGTCGACGTTTATAGCTTTGGGGTGATTCTCATGGAGATGATATCTGGTAGAAAAGCAATCGACGAGAGCCAGCCAGAAGAAAGCTTGCACCTTGTATCATGGTTCCGCAGAATGCACATTAACAAGGACACTTTCTCAAAGGCCATAGACCCTTCAATTGACATAGACGAGGAGACCCTTGCCAGCGTCAACACAGTTGCAGACTTGGCCGGCCATTGCTGTGCAAGGGAGCCATACCAGCGGCCTGACATGAGTCATGCAGTCAACGTGCTTTCGTCTCTAGTCGATGTCTGGAAGCCTACAGAACCAGATTCTGAAGAGAATTTGGGAATAGATCTTGAGCTTTCATTACCACAGGCCCTTAGGAAATGGCAGGCATTTGAAGGAAATAGCAATATGGATGAGTCATCCTCTTCGTCATCATTCCTTGCCAGTGGAGACAATACACAAACCAGCATACCGAACCGGCCATCTGGTTTTGCAAATTCATTTACCTCTGTCGACGCACGGTGA 2853 44.76 MREPHLGFGVFLLVFPLFLQFVGFSVYAQTSGGGGDGSVMNLLKNSIGAPSSLGWTGSDYCQWKHVKCDSQNRVVKIQVGNQNLKGSLPAELSSLSALVQLEVQSNQLGGPFPNLADSLQILLAHDNLFTSMPSDFFAKKSALQTIDIDNNPFSAWRIPDNIRDASGLQEISANRVNITGTIPEVFDGSTFPTLRNLHLAGNFLEGGLPASLAGSSIQSLWLNGQQSSSKLNGSIAILQNMTNLQEVWLHLNQFSGPLPDFSNLQELVNLSLRDNQLTGIVPSSLVNLKSLMVVNLTNNMLQGPTPAFNPNVQLDMRPRSNNFCLDSPGEPCDPRVNALLSVAQSMGFPTAFAQGWEGNNPCENFKGVTCTGNPENITIINFKNMGLAGSISPSFSLLTSVQKLILSNNFLSGTIPNELVNMPSLTELDVSNNRLHGKVPAFRKNVIVNTDGNPDIGKDSASAPAPGSPTGTSPSGGSGDVSDKGGKKSNTGAVVGSIIGVIVGLLLVGTVIFFLYKRKKRHGSRVQSPNTVVVHPSHSGDQNSVKITITEARADGSAPETSRVPIAGPSDVHVVEAGNLVISIQVLRNVTNNFSPENILGKGGFGTVYKGELHDGTKIAVKRMESGVIGEKGLNEFKAEIAVLTKVRHRNLVALLGYCLDGNERLLVYEYMPQGTFSRFLFHWKEEGIKPLEWKRRLIVVLDVARGVEYLHSLAHQSFIHRDLKPSNILLGDDLRAKVADFGLVRLAPEGKASIETRLAGTFGYLAPEYAAVTGRVTTKVDVYSFGVILMEMISGRKAIDESQPEESLHLVSWFRRMHINKDTFSKAIDPSIDIDEETLASVNTVADLAGHCCAREPYQRPDMSHAVNVLSSLVDVWKPTEPDSEENLGIDLELSLPQALRKWQAFEGNSNMDESSSSSSFLASGDNTQTSIPNRPSGFANSFTSVDAR 950
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7594190 7597963 - ClCG01G006700.1 Cla01g00653 264242

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00653 950 SUPERFAMILY Protein kinase-like (PK-like) 575 883 IPR011009 -
Cla01g00653 950 Pfam Protein kinase domain 597 869 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00653 950 Gene3D Phosphorylase Kinase; domain 1 560 671 - -
Cla01g00653 950 Gene3D Ribonuclease Inhibitor 35 331 IPR032675 -
Cla01g00653 950 SUPERFAMILY L domain-like 340 442 - -
Cla01g00653 950 SMART serkin_6 594 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00653 950 SUPERFAMILY L domain-like 39 327 - -
Cla01g00653 950 MobiDBLite consensus disorder prediction 465 479 - -
Cla01g00653 950 Gene3D Transferase(Phosphotransferase) domain 1 672 889 - -
Cla01g00653 950 ProSitePatterns Protein kinases ATP-binding region signature. 600 622 IPR017441 GO:0005524
Cla01g00653 950 Gene3D Ribonuclease Inhibitor 334 460 IPR032675 -
Cla01g00653 950 Pfam Leucine rich repeat N-terminal domain 36 69 IPR013210 -
Cla01g00653 950 Pfam Leucine rich repeat N-terminal domain 336 370 IPR013210 -
Cla01g00653 950 PANTHER OSJNBA0070M12.3 PROTEIN 30 950 - -
Cla01g00653 950 TIGRFAM LPXTG_anchor: LPXTG cell wall anchor domain 490 521 - -
Cla01g00653 950 CDD STKc_IRAK 600 874 - -
Cla01g00653 950 MobiDBLite consensus disorder prediction 453 487 - -
Cla01g00653 950 ProSiteProfiles Protein kinase domain profile. 594 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00653 950 MobiDBLite consensus disorder prediction 912 950 - -
Cla01g00653 950 ProSitePatterns Serine/Threonine protein kinases active-site signature. 719 731 IPR008271 GO:0004672|GO:0006468
Cla01g00653 950 PANTHER RECEPTOR PROTEIN KINASE TMK1 30 950 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00653 - - K00924 csv:101210025 1637.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00653 Cla-Chr1:7594190 Cla01g00855 Cla-Chr1:10456432 0 dispersed
Cla01g00653 Cla-Chr1:7594190 Cla01g01142 Cla-Chr1:19196289 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g532 . . Bda01g01787 Bda11g00197 Bpe13g00997 . . . . Cmo18g00627 . . . . . . Cpe01g01857 . . . . . . . . . . . . . . . . . . . Csa05g01967 . . . . . Bda11g00197 . Bpe02g01964 Bma01g00495 Bma06g01141 . Cmo04g02234 Cmo15g00927 Cma04g02141 Cma15g00889 Car04g02076 Car15g00835 Cpe13g00428 . Bhi12g00963 . . . . . Lcy10g1596 Cla01g00653 . . . . . . Lsi09g00707 . Chy09g00467 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001831 2 2 1 2 3 1 4 1 1 2 2 1 4 2 1 4 1 1 4 1 2 2 2 2 2 2 2 3 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80247 PF00069 Pkinase 7.50E-47 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00653 Cla_Chr01 FPKM 1.733569 2.19763 113.561142 114.646164 249.97319 268.049438 253.29277 37.062962 37.589607 38.188763