Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00654 ATGGGTATGAAAATGCAGCAGGGCAACAACGCTGTGGCTATGAAGTGTAACGAGCAAATGGGAACAACAAAGAAGGGTTACACATTTGTTGAAGCTAACAGGGCTTGGCTTAGAAAGTATCTTCTATTCTGGATTATGGGGATGGCGTTTATCAGCATGTTAATCTATAATGGCATGGATGCTGATAATAAAGTGAGGAGGAACGAAGTGTTGGGGAGCATGTGCGAGCAGAGAGCAAGGATGTTGCAGGATCAATTCAGTGTTAGTGTTAACCATGTTCATGCGTTGGCTGTCCTTGTTTCCACCTTTCATTACTTCAAAAACCCTTCTGCTATTGATCAGGAAACTTTTGCAGAATACACAGCCAGAACTGCTTTTGAACGGCCTCTACTCAGTGGGGTGGCGTACGCACAAAGAGTGATTCATTCAGAGAGGGATATCTTTGAAAAGCAACACGGGTGGATGATAAAAACAATGAAAAGAGAACCTTCGCCAATTCGAGATGAATATGCACCAGAGGACCGTGAAAATATTTTGAGGGCTAGAGCAACAGGAAAGGCTGTTTTAACAAGCCCCTTCAGGCTGCTGGGTTCTCATCATCTTGGAGTTGTTTTGACGTTTCCCGTTTACAAGTCCAAATTGCCATCTAAACCAACCGAAGAAGATCGGATTGAAGCAACAGCAGGCTACGTTGGTGGAGCCTTTGATGTTGAGTCACTTGTGGAGAACTTGCTTGGGCAGCTTGCAGGGAATCAGGCCATTTTGGTGAACGTATATGATGTCACAAACTCTTCTGATCCCCTCGTCATGTATGGTCATCAATATCAAGATGGTGACTTGTCTCTTTTGCATGAGAGTAGCCTTGATTTTGGAGATCCATTCAGGAAGCATTTGATGATTTGTAGATATCAGCAGAGGGCTCCCACATCCTGGACTGCCCTGACTACAGCATTCTTATTCTTCGTGATCGGGTTGTTAGTTGGATATATTTTGTATGGTGCAGCAACTCACATTGTGAAGGTTGAAGATGACTTTCATGAGATGAAAAAACTGAAATTTCGCGCGGAGGCTGCTGATGTGGCAAAATCCCAGTTTCTTGCAACTGTTTCTCACGAAATTAGGACACCAATGAATGGCATCCTTGGAATGCTTGCTCTGCTTCTGGATACAGATTTAAGTTCTACACAGAAGGATTATGCTCAGACTGCTCAGGCTTGTGGAAAGGCACTGATAGCATTAATAAATGAGGTTCTTGACCGGGCCAAAATTGAAGCTGGAAAGTTAGAACTGGAAGCAGTTCCGTTTGACATTCGATCAATACTCGATGATGTGCTATCTTTATTTTCCGAGAAGTCCAGACAAAAGGGTCTGGAGCTGGCAGTTTTTGTTTCTGATAAAGTTCCAGAAATTGTTATTGGAGATCCTGGAAGATTCAGACAAATTATAACAAATCTTGTGGGTAACTCTGTTAAGTTTACTGAAAGGGGACATATATTTGTTAAAGTACACCTAGCTGAGCATTCTAAAGGCTCCATTGATTCAAAATATGTCAATGGAATATCTGACAGTGACTTATTCATATTGGGTGGTCGTGAATTTCAAACTTTGAGTGGATGTGAGGCAGCCGATGACCAGAACAGCTGGGATAACTTTAAACATCTGATTGCTGATGAGGACTTCCAGTTGAATGGCACTCCGAACAACATGGTAGTTTCCAAGGAGGGTTGTGGTCATGTTACTTTGATGGTAAGTGTGGAGGATACTGGAATTGGGATCCTCTTACATGCCCAAAATCGAGTTTTCATGCCTTTCATGCAAGCAGATAGCTCGACCTCCCGCAATTATGGGGGGACTGGTATTGGCTTGAGTATCAGCAAATGTTTAGTTGAACTAATGGGTGGTCAGATCAACTTCATAAGCCGGCCTCAGATTGGAAGCACGTTTTCCTTCACTGCTGTTCTAGGAAAATGTAAGAAGAATTCAATCAATGATATGAAAAAACCCAGCTCTGAAGAACTTCCCCCCAGTTTTAGAGGAATGAAGGCAATCATAGTTGACAGGAAACATGTTAGAGCTTCTGTGACCAGATATCATTTGAAGAGACTTGGTGTTATAGTTGAAGTCACCAGTACCATCAACATGGCAGCTTCTTTATGCAGAGAAAATGGATCCACAGTGCCAGGTAAGATATTTGAGATTTTAGATAATGTAAGGGGGAGAGGGGTTCAGTCCAGTTCTCTCAATTGTAAGTTTGAACACTTGAAAACTGCGAGAAACTCAATCCTTCCAGATATGATCTTAGTTGAAAAAGACACATTAAAGTCCGATGAGGAATGTGGGATCATTCATCAACTGAACTGGAAACTGAACGGGAGTTCGTTTAAGTTACCAAAGCTGATCCTTCTTGCTACAAATATTACCACTGCAGAACTAGACAAGGCAAGAACAGCAGGTTTTGCAGACACCGTGATCATGAAGCCGTTAAGGGCGAGTATGGTGGCTGCCTGTCTTCAACAAGTACTCGGAGTTAAGAATCAGAGACGAGGAAGGGGCCTACCGAACGGTTCTGCTTTCCTCCAGAGCCTTCTCTGTGGCAAGAGAATCTTAATTGTTGATGACAACAGAGTAAACCGTAGGGTCGCTGCAGGCGCTCTGAAGAAATTTGGTGCAGATGTTGAGTGTGCAGATAGCGGGAAAGCTGCCCTGAAGTTGCTTCAGCTACCGCACAATTTCGATGCTTGCTTCATGGATATTCAAATGCCTGAAATGGATGGGTTTGAGGCAACTCGTCTTATCAGGATGATGGAGAACAAGGCAAACGAAGGAGGACCGTCTGCAGCGGAAGGCAAGTGGCATATGCCGATATTAGCAATGACTGCAGATGTGATTCATGCTACGTATGATGAATGCCTGAAATGCGGAATGGATGGCTACGTGAAAAGAGCCGGAGGCAAAATCTCCATTGCAGACCTCTTTGATGGTGGGTTGGAAGTACCAGCAAGTTTTGACACCATTGCTGGTGCTAACTGTCTTCTTGCTTCGACGAGAGCGTCGGGAATTCTTGACTGGCATTGA 3075 43.64 MGMKMQQGNNAVAMKCNEQMGTTKKGYTFVEANRAWLRKYLLFWIMGMAFISMLIYNGMDADNKVRRNEVLGSMCEQRARMLQDQFSVSVNHVHALAVLVSTFHYFKNPSAIDQETFAEYTARTAFERPLLSGVAYAQRVIHSERDIFEKQHGWMIKTMKREPSPIRDEYAPEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPSKPTEEDRIEATAGYVGGAFDVESLVENLLGQLAGNQAILVNVYDVTNSSDPLVMYGHQYQDGDLSLLHESSLDFGDPFRKHLMICRYQQRAPTSWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMKKLKFRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQKDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRQKGLELAVFVSDKVPEIVIGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAEHSKGSIDSKYVNGISDSDLFILGGREFQTLSGCEAADDQNSWDNFKHLIADEDFQLNGTPNNMVVSKEGCGHVTLMVSVEDTGIGILLHAQNRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQIGSTFSFTAVLGKCKKNSINDMKKPSSEELPPSFRGMKAIIVDRKHVRASVTRYHLKRLGVIVEVTSTINMAASLCRENGSTVPGKIFEILDNVRGRGVQSSSLNCKFEHLKTARNSILPDMILVEKDTLKSDEECGIIHQLNWKLNGSSFKLPKLILLATNITTAELDKARTAGFADTVIMKPLRASMVAACLQQVLGVKNQRRGRGLPNGSAFLQSLLCGKRILIVDDNRVNRRVAAGALKKFGADVECADSGKAALKLLQLPHNFDACFMDIQMPEMDGFEATRLIRMMENKANEGGPSAAEGKWHMPILAMTADVIHATYDECLKCGMDGYVKRAGGKISIADLFDGGLEVPASFDTIAGANCLLASTRASGILDWH 1024
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7622763 7630534 - ClCG01G006710.2 Cla01g00654 264243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00654 1024 Gene3D - 334 424 - -
Cla01g00654 1024 SMART HKATPase_4 473 656 IPR003594 -
Cla01g00654 1024 SUPERFAMILY CheY-like 865 979 IPR011006 -
Cla01g00654 1024 Pfam Response regulator receiver domain 868 980 IPR001789 GO:0000160
Cla01g00654 1024 CDD HATPase_EvgS-ArcB-TorS-like 478 654 - -
Cla01g00654 1024 Gene3D - 425 659 IPR036890 -
Cla01g00654 1024 PANTHER TWO-COMPONENT HISTIDINE KINASE 23 728 - -
Cla01g00654 1024 PANTHER TWO-COMPONENT HISTIDINE KINASE 754 981 - -
Cla01g00654 1024 SMART REC_2 866 992 IPR001789 GO:0000160
Cla01g00654 1024 ProSiteProfiles CHASE domain profile. 108 154 IPR006189 -
Cla01g00654 1024 ProSiteProfiles Histidine kinase domain profile. 368 656 IPR005467 -
Cla01g00654 1024 Gene3D CHASE domain 112 172 IPR042240 -
Cla01g00654 1024 Gene3D CHASE domain 173 307 IPR042240 -
Cla01g00654 1024 Coils Coil 411 431 - -
Cla01g00654 1024 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 473 654 IPR003594 -
Cla01g00654 1024 PANTHER HISTIDINE KINASE 4 23 728 - -
Cla01g00654 1024 PANTHER HISTIDINE KINASE 4 754 981 - -
Cla01g00654 1024 Pfam CHASE domain 172 271 IPR006189 -
Cla01g00654 1024 CDD REC_hyHK_CKI1_RcsC-like 868 993 - -
Cla01g00654 1024 ProSiteProfiles Response regulatory domain profile. 867 996 IPR001789 GO:0000160
Cla01g00654 1024 Pfam His Kinase A (phospho-acceptor) domain 361 426 IPR003661 GO:0000155|GO:0007165
Cla01g00654 1024 PRINTS Bacterial sensor protein C-terminal signature 616 634 IPR004358 GO:0016310|GO:0016772
Cla01g00654 1024 PRINTS Bacterial sensor protein C-terminal signature 581 595 IPR004358 GO:0016310|GO:0016772
Cla01g00654 1024 PRINTS Bacterial sensor protein C-terminal signature 599 609 IPR004358 GO:0016310|GO:0016772
Cla01g00654 1024 PRINTS Bacterial sensor protein C-terminal signature 640 653 IPR004358 GO:0016310|GO:0016772
Cla01g00654 1024 ProSiteProfiles CHASE domain profile. 166 300 IPR006189 -
Cla01g00654 1024 Gene3D - 858 990 - -
Cla01g00654 1024 Gene3D - 59 111 - -
Cla01g00654 1024 SMART HisKA_10 361 426 IPR003661 GO:0000155|GO:0007165
Cla01g00654 1024 CDD HisKA 361 422 IPR003661 GO:0000155|GO:0007165
Cla01g00654 1024 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 347 427 IPR036097 GO:0000155|GO:0007165
Cla01g00654 1024 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 415 651 IPR036890 -
Cla01g00654 1024 ProSiteProfiles Response regulatory domain profile. 681 841 IPR001789 GO:0000160
Cla01g00654 1024 SMART CHASE_2 108 273 IPR006189 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00654 Cla-Chr1:7622763 Cla11g00097 Cla-Chr11:1275702 0 dispersed
Cla01g00654 Cla-Chr1:7622763 Cla02g00275 Cla-Chr2:2706911 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60379 PF02518 HATPase_c 2.10E-31 CL0025 Cla TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00654 K14489 - csv:101209777 1763.43