Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00664 ATGTTGAAACCTTCAACTTCTTCTTCTTCTGGTGGTCTTCCTCTTCCTCCTCCTCTTCCTCCTCCCAATTCTGACCATGCCATCACCAGCAAAAGAAAAAGAAGACCCGCAGGAACTCCAGATCCGGATGCGGAAGTGGTTTCTTTATCCCCAAAAACGCTTCTTGAATCGGATCGGTATGTTTGTGAGATATGCAACCAAGGGTTTCAAAGGGATCAGAATCTTCAGATGCACCGGCGCCGCCACAAAGTGCCTTGGAAGTTACTAAAGAGAGCGGAGACGGCGGAGAGTGTGAAGAAAAAGGTGTTTGTTTGTCCGGAGCCGACGTGTCTTCACCATGACCCTTGCCATGCTCTTGGTGATCTCGTCGGTATAAAAAAGCACTTCCGGAGAAAGCATAGCAACCAAAAGCAGTGGGTTTGTGACAAGTGCTCTAAGGCTTATGCTGTTCATTCTGATTTCAAAGCTCACCTCAAAACTTGTGGCACTCGTGGCCACTCTTGTGATTGTGGTCGTGTCTTTTCCAGAGTGGAGAGCTTTATAGAGCACCAAGACACTTGCAATCTCCGCCAGATGAGGTCCGATCAGTTGCAACCAGTGGTGCCGCCGTTACCACCACCGCTGTTATTGCAACCCTACTCACGATCAGTTTCTTACACCGGCGCTTCCACCAGCAACGATCATAGCTTTCAAATGGCTACTCCATTACGAGGGTTTCCAATCTTATCATCAAACTCGGATCGAAACATCAACATCAATTTACCCGATCACCACGATCTCGAACTTCATCTCTCTTCTCCGAGCTCAGCCTTTCTAAAGCTCTCAATTGGGTCCAACAAGGAGCCGAATGACGAGTGTCAACTCGAGCTGGCGATAGCGGAGAAGGCTTACGCAGACGAAGCAAGACGAGAGGCGAAACGACAGATCGAAATCGCCGAAGTCGAGTTTGCAAATGCCAAAATGATACGACAGCAAGCTCAAGCGGAGTTGGAGAAAGCAAGGATCTTGAAGGAAGAAGCTAGCCGGAAAATGAGCTCCACTATTATGGAAATCACTTGCCAAACTTGCCGGTTGCACTTTCACATGAGTTCGGCCGCTCCTGAAGAGACCTCACTCGCCATCAGCTACATGTCGTCTGCTACGACAGAAGGTGACGGAGAATGA 1164 48.88 MLKPSTSSSSGGLPLPPPLPPPNSDHAITSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRAETAESVKKKVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNQKQWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDTCNLRQMRSDQLQPVVPPLPPPLLLQPYSRSVSYTGASTSNDHSFQMATPLRGFPILSSNSDRNININLPDHHDLELHLSSPSSAFLKLSIGSNKEPNDECQLELAIAEKAYADEARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEASRKMSSTIMEITCQTCRLHFHMSSAAPEETSLAISYMSSATTEGDGE 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7864149 7865934 + ClCG01G006810.1 Cla01g00664 264253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00664 387 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Cla01g00664 387 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 285 387 - -
Cla01g00664 387 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 18 270 - -
Cla01g00664 387 MobiDBLite consensus disorder prediction 1 46 - -
Cla01g00664 387 SUPERFAMILY beta-beta-alpha zinc fingers 59 159 IPR036236 -
Cla01g00664 387 Gene3D Classic Zinc Finger 124 199 - -
Cla01g00664 387 Gene3D Classic Zinc Finger 38 106 - -
Cla01g00664 387 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Cla01g00664 387 PANTHER OS03G0310200 PROTEIN 18 270 IPR039288 GO:0009630
Cla01g00664 387 PANTHER OS03G0310200 PROTEIN 285 387 IPR039288 GO:0009630
Cla01g00664 387 Coils Coil 302 343 - -
Cla01g00664 387 SMART c2h2final6 60 82 IPR013087 -
Cla01g00664 387 SMART c2h2final6 103 133 IPR013087 -
Cla01g00664 387 SMART c2h2final6 139 166 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00664 Cla-Chr1:7864149 Cla04g01024 Cla-Chr4:25367873 2.21E-142 dispersed
Cla06g01742 Cla-Chr6:30979089 Cla01g00664 Cla-Chr1:7864149 8.40E-18 dispersed
Cla01g00664 Cla-Chr1:7864149 Cla01g01891 Cla-Chr1:33706688 1.15E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60381 None None None None Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00664 K25871 - csv:101210468 674.47