Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00669 ATGGCGGGAGTAGAATTGCTGGATATGTTTCCGCATCGGGACCTGGAAGAGGGAGCAACTGCCTCGCCTGATTGGAATCCAACTGATGCTGTGCTGTTTGTTGGACTGAGTTTGGTGCTTGGAATTGCTTGCAGACACCTACTGCGAGGCACAAGAGTTCCTTATACAGTTGCCTTGCTTGTTCTTGGCATAGTTCTTGGATCCATTGAATATGGCACACATCATCAATTGGGAAAGATAGGGGACGGCATACGTCTCTGGGCAAAAATTGATCCTGATCTATTACTGGCTGTTTTCCTCCCTGCTTTGCTGTTTGAAAGTTCCTTTTCAATGGAAGTGCATCAAATAAAGAGGTGTCTGGCCCAAATGATCTTATTGGCTGGTCCAGGTGTTTTAATTTCAACTCTCTTGCTAGGATCTGCTTTCAAGCTCACTTTCCCATATAATTGGAGTTGGAAAACATCATTGTTGCTTGGGGGACTTCTGAGTGCCACAGATCCTGTGGCTGTTGTAGCTCTATTGAAAGAGCTAGGAGCAAGTAAAAAACTGAATACGATAATAGAAGGAGAATCCTTGATGAATGATGGTTTGGGAATTGGTCTTGCTTTTGGGATTGCATCTGTTCTATGGCTCGGATTCATTTTCAACGACACAGTGATAGAGATTGCATTAACTCTAGCTGTGAGCTATATTGCTTACTTCACTGCTCAAGAGGGAGCTGATGTGTCCGGTGTTTTGGCGGTGATGACATTAGGAATGTTTTATGCTGCAGTTGCAAGAACAGCTTTTAAGGGTGACGGTCAACAAAGCTTACATCATTTTTGGGAAATGGTTGCTTACATAGCGAATACGTTAATTTTCATATTGAGTGGAGTTGTTATCGCTGAAGGAGTTCTTGGAAGCGAAGGAATTCTTAATAATGAGGATGGTTATGATATAACTCACTCTTCTCAAGCCCAATCACTTCCTGACCCAAAAAGCCACCTTGTACTCAAGGGAAACTCTGTAAACCAAACAGCGACACCATCGGTACACTCCCAGGTTGCATGTCCTCCATCCCAGTGCATCAGAACTTTCAAAACAGCAGGGTCGGCTCCTGTCTTCTGCAAACCCAAAACCATGATTGAAACAGCATGCACCACCATATCTGCTGAGCTTCATGGGGCTTCCTCATTCTGCTTTATGTGTCTGCGTGGTGCTGTTGCTCTGTCACTTTCACTACGTTTGATCATGTACTTGTGCTTTGGGGACTCCATAAATGATGTTGGGCTTTGGGGATTAGTGCGATCAAGTGACCACTCATTGTACATCAGTTCAGAAACTGGAACTCTGAAACGCATAATGGATTATACAAAATACGAGATGATGAACAAAGCATTGGGCGCCTTTCGAGATCTTGGAGATGATGAGGAATTGGGACCTGCTGACTGGCCTACAGTTAAAAGACATATTACAAGTCTTAGTCACGTGGAGGGGGAACCATTGCACCCGCACAATGCATTTGAAAGTGATCAAAATGTTCACTCTATGAATTTGAGAGACACTCGTCTGCGACTTTTGAATGGTGTTCAAGCTGCTTACTGGGGTATGCTTGATGAGGGAAGGATAACACAAAGTACTGCAAATATCTTGATGCAATCTGTGGATGAAGCCCTTGATCAGGTTGCAAATGAGCCCTTATGTGATTGGAAAGGTTTAAAAGCTAATGTCCATTTTCCAAATTATTACAAGTTCCTTCAGACAAGCATTTTCCCTCGGAAGTTGGTTACATATTTCACTGTGGAAAGATTGGAATCTGGATGTTATATTTGTGCTGCATTTCTCCGTGCACATAGAATTGCAAGACGACAGCTTCATGAGTTTATAGGTGATAGTGATGTTGCTTCTACTGTAATTAATGAAAGTGAGGCTGAGGGTGAAGAAGCACGAAAGTTTCTAGAAGATGTTCGTGAGACATTTCCTCAGTACTCTAGGGCTCTCATATATGTGCATAATTTGTACAGCTATTTGCTGGTTTTGCGTGTTGTTAAAACCAGACAGGTAACATATTCAGTGCTCAACCATTTAATTGAATATGTCCAAAATCTGGAGAAGGTTGGCCTATTAGAAGAGAAAGAGATGCTGCATCTTCATGATGCTGTTCAGACTGACTTAAAAAGACTTCTAAGAAATCCTCCTCTGTTAAAGGTTCCGAAAATGCGGAACTTAATCACTGCCCATCCATTTCTTGGGGCACTTCCTCCTTTAGTGCGCGAACCACTTGAAGTTTCCACAAAAGAAGTGATGAAACTACGTGGTGTGACACTTTACAAGGAAGGTTCAAAGCCTAGTGGTGTTTGGCTTATATCCAATGGAGTGGTAAAGTGGGTAAGTAAGAGCATGAGAAACAAGTTCTCCTTGCACCCCACATTTACTCATGGAAGTACTTTGGGCCTATATGAATTGCTTACTGGGAAGCCATGCATCTGTGACATGATTACAGATTCCGTTGTTCTCTCTTTTTTTATTGAACATGATAAGTTTCTGTCAGTACTTAGATCAGATCCTTCGGTTGAAGACTTCTTGTGGCAGGTATTACTATTGACTGCAGAACTTTGTTTTTGTAGTACTATTGTTATGGATCCTGACTCCCTATCGAATGTCAAATGTGGAATTGGCAATGCTTATTTTGGCTGGGTTTGCATGCAGGAAAGTTCCATTGTGCTTGCCAAACTCTTGCTTCCACAAGTATTTGAGAAAATGGAAATGAGAGATTTGAGAGTTCTTGTTGTTGAAAGGTCAGTAATGACCACGCATATAGCAGGAGAAACAATAGAAATTCCACGCCATTCTATTGGCCTTTTGTTAGAAGGATTTATCAAAAGTCATGGCATCCAAGAGGAACTAATAGCCTCACCTGCTGTATTGTTCTCCTCGCATGGGAATCCAAGCTTCCATAATATGGAAAACTCAGGAATGCCATTGACGATTGAAAAGTTGGGTGGAGATGAAAGGCAACTGTTGATCCTCGCTAGAGGATTCCTTTCTGAAATTTTTCTTTCCCTCAAATTGGAGATAATACTAACAATGGTTGAGTTTCCTAGCAGCCTTGTTGAAGACCTCCATAAGGTTTCAGACGTGGTCCCATGGACAGGAAGAGCTGATTATATTTTGGAATCAGACTACGGCCGGATGAGTGGTTCTAGTTTTTCTCATCAAGGCTCCTATTATGAAGTTGAAACAAGATCAAGAGTAATCATTTTTGACATGGCTGCCCTTCAATCAGATGACAATCTAAATCGGTCATCATCTTTTATACATTCTGTTGATCACCCTCAAAGATCTCTGAGCAGAGATCACTCTGGTCTTATGAGTTGGCCTGAACTGCTTTCCAAGCCTAGACCACCACAGAAGCAGAAATCTGAAAGAACTGAGCGTCCAGCTGATAGCTTGTCTGAAAAGGCTATGCAACTAAGCATATACGGTAGCAGCATGGTTGATATTCGTCAGCGGACTAAGAGTTTTCCAGGCAACACTGCTGAACCATCTCATAGCCGGTCAAATCCTGCAATTGGTTCATATAAAGGTATTCCCCTTCCATATGTGAAATCAGAAGGAGCTGCTACATTGAAGAAGAGGCTTGATGCAAGAAAGTTACCAATAAGCACTGTTCGGCCCCCACAAGAAAAACCAGCTCCTGATGAGAGAAATGCAAGAGATGATTCAAGTGAGGAATCTGGTGGTGAGGATGATATCATTGTGAGAATTGATTCACCAAGTGTGCTTTCATTTCACCAGGTTCCATGA 3786 42.23 MAGVELLDMFPHRDLEEGATASPDWNPTDAVLFVGLSLVLGIACRHLLRGTRVPYTVALLVLGIVLGSIEYGTHHQLGKIGDGIRLWAKIDPDLLLAVFLPALLFESSFSMEVHQIKRCLAQMILLAGPGVLISTLLLGSAFKLTFPYNWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGLGIGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAYFTAQEGADVSGVLAVMTLGMFYAAVARTAFKGDGQQSLHHFWEMVAYIANTLIFILSGVVIAEGVLGSEGILNNEDGYDITHSSQAQSLPDPKSHLVLKGNSVNQTATPSVHSQVACPPSQCIRTFKTAGSAPVFCKPKTMIETACTTISAELHGASSFCFMCLRGAVALSLSLRLIMYLCFGDSINDVGLWGLVRSSDHSLYISSETGTLKRIMDYTKYEMMNKALGAFRDLGDDEELGPADWPTVKRHITSLSHVEGEPLHPHNAFESDQNVHSMNLRDTRLRLLNGVQAAYWGMLDEGRITQSTANILMQSVDEALDQVANEPLCDWKGLKANVHFPNYYKFLQTSIFPRKLVTYFTVERLESGCYICAAFLRAHRIARRQLHEFIGDSDVASTVINESEAEGEEARKFLEDVRETFPQYSRALIYVHNLYSYLLVLRVVKTRQVTYSVLNHLIEYVQNLEKVGLLEEKEMLHLHDAVQTDLKRLLRNPPLLKVPKMRNLITAHPFLGALPPLVREPLEVSTKEVMKLRGVTLYKEGSKPSGVWLISNGVVKWVSKSMRNKFSLHPTFTHGSTLGLYELLTGKPCICDMITDSVVLSFFIEHDKFLSVLRSDPSVEDFLWQVLLLTAELCFCSTIVMDPDSLSNVKCGIGNAYFGWVCMQESSIVLAKLLLPQVFEKMEMRDLRVLVVERSVMTTHIAGETIEIPRHSIGLLLEGFIKSHGIQEELIASPAVLFSSHGNPSFHNMENSGMPLTIEKLGGDERQLLILARGFLSEIFLSLKLEIILTMVEFPSSLVEDLHKVSDVVPWTGRADYILESDYGRMSGSSFSHQGSYYEVETRSRVIIFDMAALQSDDNLNRSSSFIHSVDHPQRSLSRDHSGLMSWPELLSKPRPPQKQKSERTERPADSLSEKAMQLSIYGSSMVDIRQRTKSFPGNTAEPSHSRSNPAIGSYKGIPLPYVKSEGAATLKKRLDARKLPISTVRPPQEKPAPDERNARDDSSEESGGEDDIIVRIDSPSVLSFHQVP 1261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7943042 7966222 + ClCG01G006860.2 Cla01g00669 264258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00669 1261 SUPERFAMILY cAMP-binding domain-like 729 856 IPR018490 -
Cla01g00669 1261 MobiDBLite consensus disorder prediction 1128 1143 - -
Cla01g00669 1261 PANTHER - 25 198 - -
Cla01g00669 1261 PANTHER - 437 860 - -
Cla01g00669 1261 PANTHER - 199 300 - -
Cla01g00669 1261 Pfam Sodium/hydrogen exchanger family 32 203 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cla01g00669 1261 MobiDBLite consensus disorder prediction 1166 1190 - -
Cla01g00669 1261 PANTHER SODIUM/HYDROGEN EXCHANGER 25 198 IPR018422 GO:0006812|GO:0015299|GO:0016021
Cla01g00669 1261 PANTHER SODIUM/HYDROGEN EXCHANGER 199 300 IPR018422 GO:0006812|GO:0015299|GO:0016021
Cla01g00669 1261 MobiDBLite consensus disorder prediction 1118 1147 - -
Cla01g00669 1261 CDD CAP_ED 742 851 IPR000595 -
Cla01g00669 1261 PANTHER SODIUM/HYDROGEN EXCHANGER 437 860 IPR018422 GO:0006812|GO:0015299|GO:0016021
Cla01g00669 1261 PANTHER SODIUM/HYDROGEN EXCHANGER 890 1004 IPR018422 GO:0006812|GO:0015299|GO:0016021
Cla01g00669 1261 MobiDBLite consensus disorder prediction 1166 1183 - -
Cla01g00669 1261 Gene3D - 151 202 - -
Cla01g00669 1261 PANTHER - 890 1004 - -
Cla01g00669 1261 MobiDBLite consensus disorder prediction 1206 1261 - -
Cla01g00669 1261 MobiDBLite consensus disorder prediction 1222 1245 - -
Cla01g00669 1261 Gene3D Jelly Rolls 729 862 IPR014710 -
Cla01g00669 1261 ProSiteProfiles cAMP/cGMP binding motif profile. 742 845 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00669 Cla-Chr1:7943042 Cla01g01117 Cla-Chr1:18498195 2.43E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00669 - - vvi:100243891 1157.13