Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00675 ATGGTTTTGTCCAAAACTTTCTCTGAATCCGATGTTTCCATACATTCCACATTTGCCTCTCGCTACGTTCGGGACTCTGCTCCAAGGTTCACCATGCCCGACACCTCCATGCCCAAGGAGGCCGCCTTCCAAATCATCAACGACGAGCTCATGCTCGACGGCAACCCAAGGCTTAATCTAGCCTCCTTCATCACTACTTGGATGGAGCCCGAATGCGATAAGCTCATCATGGACTCTGTCAACAAGAACTACGTGGACATGGACGAGTACCCTGTCACCACCGAGCTTCAGAACCGCTGCGTCAACATGATTGCCCATCTCTTCAACGCCCCCTTGGGAGACTCCGACACCGCCGTCGGAGTTGGGACGGTGGGGTCGTCGGAGGCCATCATGCTGGCGGGGCTTGCTTTCAAGAGGAAGTGGCAGAACAGGCGGACAGCAGAGGGGAAGGCTTATGAGAAGCCCAATATTGTGACGGGTGCCAATGTGCAAGGTTGTTGGGAGAAATTTGCGAGATACTTTGAAGTTGAGCTGAAGGAAGTTAAGGTGAGAGAAGGGTATTACGTGATGGACCCTGTTCAAGCGGTTGAGATGGTGGATGAGAATACCATCTGCGTTGCAGCCATTTTGGGGTCAACTTACAATGGTGAATTCGAAGATGTGAAGCTGTTGAATGATTTGTTGGTGGAGAAGAATAAGGAAACTGGATGGGATACTCCCATTCACGTGGATGCGGCCAGCGGTGGGTTCATAGCGCCGTTTCTGTATCCAGAGCTTGAATGGGACTTCAGGCTTCCTCTGGTGAAGAGCATCAATGTGAGCGGCCATAAGTATGGTCTTGTCTACGCTGGAATTGGTTGGGGGATTTGGCGAACCAAACAAGATCTCCCCCAAGAACTCATTTTCCATATCAAATACCTTGGAGCGGACCAACCCACCTTCACTCTCAACTTCTCCAAAGGGTCAAGCCAAATCATTGCGCAGTATTACCAACTAATTCGATTGGGTTTTGAGGGATATCGGAATGTGATGCAAAATTGTCACGACAATGCAATGGTGCTTAAGGAAGGGCTTGAAAACACAGGGAGGTTCACCATAGTTTCAAAGGACATGGGAGTGCCCGTGGTGGCCTTCTCCCTCAAAGACCGAAGCCGGCACGACGAGTTTGAGGTATCAGAGATGTTGCGGCGGTTTGGGTGGATCGTGCCGGCTTATCCAATGCCGGAAGGGGCGAAACACGTATCAGTTCTTCGTGTGGTGATAAGAGAAGATTTCTCTCGCACGCTTGCAGAGCGGCTTGTGCTTGATATTGTAAAGGTTTTGGCTGAGTTAGACACTCTTCCACCAAAGAATGGTGGAAATGAAACGGGTGGAAAGAAGAGGGTAGAGGAAACAGAGAGGGAAATAGCGACTTATTGGAGGAATATAACGAAGGCTAGGAAAATCAGTCTTGCTGCTAATCAAGATGGTCCTTCAGTTACCGTCATTGCCAAATAA 1497 49.7 MVLSKTFSESDVSIHSTFASRYVRDSAPRFTMPDTSMPKEAAFQIINDELMLDGNPRLNLASFITTWMEPECDKLIMDSVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSDTAVGVGTVGSSEAIMLAGLAFKRKWQNRRTAEGKAYEKPNIVTGANVQGCWEKFARYFEVELKEVKVREGYYVMDPVQAVEMVDENTICVAAILGSTYNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWGIWRTKQDLPQELIFHIKYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGFEGYRNVMQNCHDNAMVLKEGLENTGRFTIVSKDMGVPVVAFSLKDRSRHDEFEVSEMLRRFGWIVPAYPMPEGAKHVSVLRVVIREDFSRTLAERLVLDIVKVLAELDTLPPKNGGNETGGKKRVEETEREIATYWRNITKARKISLAANQDGPSVTVIAK 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8027748 8029330 + ClCG01G006910.1 Cla01g00675 264264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00675 498 Gene3D - 1 65 - -
Cla01g00675 498 SUPERFAMILY PLP-dependent transferases 16 444 IPR015424 -
Cla01g00675 498 Gene3D - 66 360 IPR015421 GO:0003824
Cla01g00675 498 PANTHER GLUTAMATE DECARBOXYLASE 1 482 - -
Cla01g00675 498 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Cla01g00675 498 Gene3D - 361 448 - -
Cla01g00675 498 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cla01g00675 498 PANTHER GLUTAMATE DECARBOXYLASE 1 482 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00673 Cla-Chr1:8009138 Cla01g00675 Cla-Chr1:8027748 0 dispersed
Cla01g00675 Cla-Chr1:8027748 Cla01g00847 Cla-Chr1:10324719 0 dispersed
Cla01g00674 Cla-Chr1:8020791 Cla01g00675 Cla-Chr1:8027748 2.62E-45 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00675 K01580 - csv:101208026 949.503