Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00678 ATGTTTATGATCTCTGCTTCTAATTCTTACGTTTCCGCCATGTTTAGTTACTCCTCCTCCTCCCGTACCCTTCACATTCTTCTCCTCTTCACTGCCATTTCCCTCTCTTGCCTTGTTATTCTCAGAGAACTCAACTCCCTTCGCTACTTCCCTCTTTTCTCCTTCTCTACTTTTTCCGGTTCTCCTCCTGTTTCCCCTTTCGTCCCCTCCCTCGATGATGACGACGAGTCTTTTCCGTTTGGGTTGTCGATTAATCTACCTTCCTTAATCGTCTTTCTTGCTTCTCGTTCGTTTCCAATTGATGTTGATGAGTATGGACTGGACAAGGTCTTAATGGATGCTGCAACAGATGACAAAACTGTTATTTTAACTACTTTAAATGAAGCATGGGCATCTCCAAATTCAGTCATTGATCTCTTTCTACAAAGCTTTAGAATTGGAAATCGAACTCACCAACTATTAGACCATTTGGTTATTATTGCATTGGACAAAAAGGCATTTGTTCGTTGCTTGGATATCCATGTCCATTGCTTTGCTCTTGCTACTGAAGGAGTTGATTTTCATTCTGAGGCACATTTTATGTCACCTGACTACTTGAAGATGATGTGGAGAAGGATTGATTTTTTGCGAATTGTTCTTGAGATGGGGTACAATTTTGTATTCACGGATGCTGATGTTATGTGGTTCAGGGATCCGTTCCCTTTCTTTGATATCAATGCAGATTTCCAAATTGCTTGTGATCAATACCTGGGCATCCCTGATGATTTAGATAACAGACCAAATGGAGGGTTTAACTATGTAAAATCCAATAATCGGTCAATTGAGTTCTACAAATATTGGTACTCAGCTCGGGAAACTTATCCAGGATACCATGATCAGGACGTTCTAAATAGGATCAAATACGATTTTTTCATCGATGAAATTGGACTAAAGATTAGATTCTTGGATACTGCTTACTTTGGTGGGTTCTGTGAACCCAGCAAAGATTTGAATCGTGTACTAACCATGCATGCAAACTGCTGTATTGGAATGGACAGTAAACTTCATGATCTCAGAATTATGCTCGAGGATTGGAAACATTACATGTCGATGCCGCCATATCGTAAGACATCATCAGCGTTGTCTTGGAGGGTTCCTCAGAACTGCAGGTATGGAACCATTTCTATGTCTTAG 1173 40.41 MFMISASNSYVSAMFSYSSSSRTLHILLLFTAISLSCLVILRELNSLRYFPLFSFSTFSGSPPVSPFVPSLDDDDESFPFGLSINLPSLIVFLASRSFPIDVDEYGLDKVLMDAATDDKTVILTTLNEAWASPNSVIDLFLQSFRIGNRTHQLLDHLVIIALDKKAFVRCLDIHVHCFALATEGVDFHSEAHFMSPDYLKMMWRRIDFLRIVLEMGYNFVFTDADVMWFRDPFPFFDINADFQIACDQYLGIPDDLDNRPNGGFNYVKSNNRSIEFYKYWYSARETYPGYHDQDVLNRIKYDFFIDEIGLKIRFLDTAYFGGFCEPSKDLNRVLTMHANCCIGMDSKLHDLRIMLEDWKHYMSMPPYRKTSSALSWRVPQNCRYGTISMS 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8047913 8052278 + ClCG01G006940.1 Cla01g00678 264267

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00678 390 Pfam Nucleotide-diphospho-sugar transferase 153 351 IPR005069 -
Cla01g00678 390 PANTHER EXPRESSED PROTEIN-RELATED 79 385 IPR044821 -
Cla01g00678 390 PANTHER GLYCOSYLTRANSFERASE 79 385 - -
Cla01g00678 390 SUPERFAMILY Nucleotide-diphospho-sugar transferases 172 333 IPR029044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00678 - - - csv:101212502 611.683
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00678 Cla-Chr1:8047913 Cla04g01224 Cla-Chr4:27363904 5.72E-127 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1111 . . . . . . . . . . . . . . . . Cpe01g01874 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g02260 Cmo15g00906 Cma04g02161 Cma15g00871 Car04g02096 Car15g00818 . . Bhi12g01002 . . . . . . Cla01g00678 Cam01g0710 Cec01g0702 Cco01g0731 Clacu01g0696 Cmu01g0671 Cre09g1834 Lsi09g00735 Csa05g01313 Chy09g00455 Cme09g01261
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002430 2 2 1 3 1 1 3 2 2 2 2 2 2 2 2 3 2 2 3 2 2 1 2 2 1 2 2 4 2 2 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00678 Cla_Chr01 FPKM 12.54413 14.693433 11.429568 12.619401 13.800345 10.737329 12.02177 15.739773 16.734579 17.67119