Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00679 ATGGTGCCACTCCTAGTGGAACGTCCCGTAACCAATGGCTTTCACCAATTGCTCCGTTCCTCCTTATGCCCTTGCCCTTGTTCTTCAATCCGTAGCCTCTTCTTCCACCGCAGGAAGATGTTTCTCAGGTTGGCTGAACATCGGAATTCCTACCCGTTTCTGCATACTACAGCGAACATTTCTTCACCAAATGCTACTGGAAGGAGCAATAACGAGAAGGATTTCTGGGATGATTATGACTTCGTGGAGGTGATTGGCATTGGCAGTAGAAAGGAAGCCGTACTTGATTTTTGTCTTGAGTCGGTCCTCAGGATTTCATCGCTGCGATTTTGGCAAATTGTAAAGCATGATTCTCTAAAAGTGCAACTACTTCAGAGATTCATTGAAAAAGGGTCTCCTTTGCGGAGGTTTACAGAAGATAATGCCATGAAAGGGGTGGTGGTTAGTGCTGGATATGGCTTCGATTACTCTGCAGCTGTTGATATCCTTAGAACCATAAGATCTGCAAATGGATTTACTGTTACAATTGTCTTAAAGCCTTTTAGCTTTGAAGGGAAAAGGCGCCAGGATGAGGTTGCTGTATTTGGTGAGCGTCCAAAAGATATTATTTCTAGAGTTACTAATGATCAAGTCAATTTCAGGAGTGGTCAAAGTCCTTCCCAAATCATAGACAAGCTATGGGCCGAGGTTTACTTCAGAACATTGGCCCATCAGAGTCCCAATTCCAGTAGGGTTTCATGGGGGCTGGTCCATTCAGATATTGACACTGATAGACTACTTGAAAAGGACTTGGTGACTCTAGACGAGGCTGTGAGATCTGCAAATAATGCTGTCTTGTTGGCTATAAATTCGATGTCCATTGTGAAGTCTGAGATGTTAATAAAGTTCATAGATGAACCTCAAAATGATGTGAAAGAGCTTGGTGTTATAGACGTCATGGAAATTTTGGAGAACCTTAAAGAAGGAAAGATCGGATTTGGAGCTGGTCACAACTTCCGAACTTCAATCTTAAAGTCAATTTATGACTGCCCTTTCCTCAGTGTGCATTTAAAGGATTTGAAAGGTGTGGTTGTATGCATCGTGGCAAGCTCAAGTATTATCGATGACAATGATAAAAGCACCCTATTGAAAACTTTTCGTGAAGTTACCACATATACAGGAAAAGTTATATTATCCATAATTCAGGATCTAAATCTGGAGCCCAACTTTCTCATGACAACCGTTCTGCTTGTTGGTTCGACAAAGCAGCAATCTTCCAAAAGTAGTAGCATTTTATCTAGATTGGCCCAGCGTTTCCCTTTGGTTTTTAAGCTTTTATGGAAACCTGAAGAACCATTGGACGAACCTGAAGAAAGGGATATGCTTGAAGATGCAAGTCCTTCCAATGTAAGACAGTCACCAAACTCTGATGTGGACATAATGAAAATTGCTTCAGAGGGCATGGATAAAGATTTTTATCATGGCACAGAACCTGAAAATTGCAGTGATTTAGTCAGTTCAAGTGATTCTGAACAACTTGAGGCTGAACTGTTAGAAACTGATGTGAATTCTTTGCCTTTTAGCAATGGAATTATTAGAGGAGCTTCTTTTCGCAGAGACCCTCTCCACAGATGGAATTTGGGTCCAGGACATCAGATCGCACAGCAGTGGGCCAGAGAAAGAGCTGCTGATGCTGAGTTGGCTTCTGCACTTGACAATATAAGCATATTTGACCTCCCAGTCGGAGTGAGACCTTCAGAAGAGCTCCAAGATAAAGCCTTTCCAAATCCAGAGATGAAATATGAGAAGAAATCTAAAGCTTCAATTAGTAATTCTAGATTTTCTTCTCAGAATTCATTGACCGATGCAAGTTTAGAAGTGATTAAGGAATTTTACGATACCTCTTCTGCATTTTTAAAAGGGAAATCTTCTGACATTCCTAAGAAGCAAGGACTTCTGTCTGTTCGTGCAGCATCTATGCTGGTGACGTGTGAGAAATCTAAACGATACAGATGGTCACATTTCATTCAGGAAGCAGAGCGAGATTCACCTAAAAAATGGAATCCTGTGATGGAGCTGCAGTACAGAGGTGGCCTTTACAGGGGACGGTGCCAAGGAGGGCTCCCCGAAGGAAAGGGCCGTCTAGTTCTTCAAGACGGGAGCATATATGATGGTATGTGGCGATATGGTATGAGATCAGGTCAAGGAACAGTTTACTTCAACAATGGAGATATGTTTCAGGGATCATGGAGGGATGATGTCATGCATGGAAAGGGCTGGTTTTATTTTCACACAGGAGATCGGTGGTTTGCAAACTTCTGGAAGGGAAAGGCTTATGGAGAAGGTCGCTTCTACTCAAAGTCGGGTGATGTTATATTTGGTCATTTCCAAGATGGATGGCGTCATGGCGACTTTCTTTGCATTAATGTTGACGGTTCAAGGTTGGTACTTGCTATTCAATATATAGAAGTTTGGAATGAAGGTTATCTCATGGGACGTGAGAATTTGGACTCCGGTTCTGATACTGCATAA 2511 42.13 MVPLLVERPVTNGFHQLLRSSLCPCPCSSIRSLFFHRRKMFLRLAEHRNSYPFLHTTANISSPNATGRSNNEKDFWDDYDFVEVIGIGSRKEAVLDFCLESVLRISSLRFWQIVKHDSLKVQLLQRFIEKGSPLRRFTEDNAMKGVVVSAGYGFDYSAAVDILRTIRSANGFTVTIVLKPFSFEGKRRQDEVAVFGERPKDIISRVTNDQVNFRSGQSPSQIIDKLWAEVYFRTLAHQSPNSSRVSWGLVHSDIDTDRLLEKDLVTLDEAVRSANNAVLLAINSMSIVKSEMLIKFIDEPQNDVKELGVIDVMEILENLKEGKIGFGAGHNFRTSILKSIYDCPFLSVHLKDLKGVVVCIVASSSIIDDNDKSTLLKTFREVTTYTGKVILSIIQDLNLEPNFLMTTVLLVGSTKQQSSKSSSILSRLAQRFPLVFKLLWKPEEPLDEPEERDMLEDASPSNVRQSPNSDVDIMKIASEGMDKDFYHGTEPENCSDLVSSSDSEQLEAELLETDVNSLPFSNGIIRGASFRRDPLHRWNLGPGHQIAQQWARERAADAELASALDNISIFDLPVGVRPSEELQDKAFPNPEMKYEKKSKASISNSRFSSQNSLTDASLEVIKEFYDTSSAFLKGKSSDIPKKQGLLSVRAASMLVTCEKSKRYRWSHFIQEAERDSPKKWNPVMELQYRGGLYRGRCQGGLPEGKGRLVLQDGSIYDGMWRYGMRSGQGTVYFNNGDMFQGSWRDDVMHGKGWFYFHTGDRWFANFWKGKAYGEGRFYSKSGDVIFGHFQDGWRHGDFLCINVDGSRLVLAIQYIEVWNEGYLMGRENLDSGSDTA 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8054694 8072851 - ClCG01G006950.2 Cla01g00679 264268

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00679 836 SMART morn 737 758 IPR003409 -
Cla01g00679 836 SMART morn 691 712 IPR003409 -
Cla01g00679 836 SMART morn 714 735 IPR003409 -
Cla01g00679 836 Gene3D Tubulin/FtsZ, GTPase domain 253 412 IPR036525 -
Cla01g00679 836 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 690 809 - -
Cla01g00679 836 PANTHER PROTEIN ACCUMULATION AND REPLICATION OFS PROTEIN 257 835 - -
Cla01g00679 836 Gene3D - 695 744 - -
Cla01g00679 836 Gene3D - 745 806 - -
Cla01g00679 836 MobiDBLite consensus disorder prediction 447 469 - -
Cla01g00679 836 Pfam MORN repeat 739 761 IPR003409 -
Cla01g00679 836 Pfam MORN repeat 716 738 IPR003409 -
Cla01g00679 836 Pfam MORN repeat 698 714 IPR003409 -
Cla01g00679 836 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED 257 835 - -
Cla01g00679 836 SUPERFAMILY Tubulin nucleotide-binding domain-like 84 190 IPR036525 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00679 - - - csv:101217933 1239.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00679 Cla-Chr1:8054694 Cla09g01405 Cla-Chr9:25972898 5.93E-10 dispersed
Cla01g00679 Cla-Chr1:8054694 Cla03g00885 Cla-Chr3:12336008 1.05E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1110 . . Bda01g01766 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g01940 . . . . Cmo15g00905 . Cma15g00870 . Car15g00817 . . Bhi12g01003 . . . . . Lcy10g1569 Cla01g00679 Cam01g0711 Cec01g0703 Cco01g0732 Clacu01g0697 Cmu01g0672 Cre09g1833 Lsi09g00736 Csa05g01314 Chy09g00454 Cme09g01260
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009880 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 2 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00679 Cla_Chr01 FPKM 75.148125 89.548943 57.692028 54.965363 46.189812 48.29726 44.771545 74.743675 78.201431 75.389259