Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00681 ATGTTGCGACAAAACTTAGTGCTCTATGACTCATTAAATCTTCACTTTTTTAAAAAAAAGAAAAGAAATCTTGTTTTTCTGGATGATTCTAATGCAATAGTAATGTGTTTAATTCCCTTTCAATCTTTATATAAACCTCTTTCCATATTCACTTCTCACTCAAAAACACATAAATTAAAATCTCCTTTTTATCTCTCTCTCTCTCTCAATATGAAGTTCTTTTCCGCTGCAATTTTGTTGCTCCTCCTGCTTCTTGCCACTGGGATGGGGCCCATGGTGACAGACGCAAGGACATGTGAATCTCCGAGCCGACACTTCAAGGGGCTGTGCTTCAGTAAGAACAACTGTGGCCATGTCTGCAAAACGGAAGGCTTCCACGGCGGCCATTGCAGGGGCTTCCGCCGCCGGTGCTTCTGCACAAAGCACTGCGTTTGA 435 42.3 MLRQNLVLYDSLNLHFFKKKKRNLVFLDDSNAIVMCLIPFQSLYKPLSIFTSHSKTHKLKSPFYLSLSLNMKFFSAAILLLLLLLATGMGPMVTDARTCESPSRHFKGLCFSKNNCGHVCKTEGFHGGHCRGFRRRCFCTKHCV 144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8091757 8092591 + ClCG01G006965.1 Cla01g00681 264270

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00681 144 CDD Knot1 108 140 IPR003614 GO:0006952
Cla01g00681 144 Pfam Gamma-thionin family 97 143 - -
Cla01g00681 144 SMART gth_4 98 143 IPR003614 GO:0006952
Cla01g00681 144 PANTHER DEFENSIN-LIKE PROTEIN 1 68 143 - -
Cla01g00681 144 Gene3D - 97 143 IPR036574 -
Cla01g00681 144 PRINTS Purothionin signature 128 142 IPR008176 GO:0006952
Cla01g00681 144 PRINTS Purothionin signature 98 113 IPR008176 GO:0006952
Cla01g00681 144 ProSitePatterns Gamma-thionins family signature. 97 120 IPR008176 GO:0006952
Cla01g00681 144 PANTHER DEFENSIN-LIKE PROTEIN 1 68 143 - -
Cla01g00681 144 SUPERFAMILY Scorpion toxin-like 97 143 IPR036574 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00681 - - - mcha:111015597 138.272
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00681 Cla-Chr1:8091757 Cla02g00014 Cla-Chr2:191714 3.27E-14 dispersed
Cla01g00680 Cla-Chr1:8087100 Cla01g00681 Cla-Chr1:8091757 2.67E-29 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1101 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00681 Cam01g0714 Cec01g0705 Cco01g0735 Clacu01g0700 . . . . . Cme09g01259
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001561 0 2 0 1 1 3 0 3 3 1 3 3 11 3 3 4 1 1 3 0 1 2 2 1 2 1 4 3 4 1 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00681 Cla_Chr01 FPKM 4.683772 4.231552 8.629853 8.712112 1.539821 1.744052 1.309283 0.789589 0.616827 0.573512