Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00715 ATGAATGGGAAGGATGAATTTGAAGTTGAGAATAGGACGAGTGATCCTATGAGTATCTCCTCCGGCTGGCAATTTGCTGCTGCTGCTAATCTCACTAATGAGTCTGTTGGATTCGTTTCTACCGGGAATCCTTCTGTTGTTAGCAATGGGGATCTAGGTGTTTCTTCTTGTCCTTCGACTTCAATGTCTAACTTATTTACTTCAACACTTTTGAACCATCATACCGAATCGCAAAACTCGGGATTCTGCACCACTTTTAATGAACAAAACAGCATAGTTGCTTCTAATACGACTGTAGTTGATGGGGAGGGTCTGAATTCTTTGAGATCTAATGGTGATACTAGAACGCTGGGTATGGATTGGAATCAACAAAATCCATGGATGAAAGGAATTTTCTCAGGAAATGTTCCTGGAATATTTCCAGCTAATTTGTCTCAACTTCCAGCTGATTCGGCATTCATCGAACGTGCAGCAAGGTTCTCCTGCTTCAATAGCGGAGTTTTTGGGGCTCCGCCTACTGGTCCATTTGGCATTTCAGACTCTATAGGCATTCATTCTGGGAGTGGATTTGGAAGGCAAGAAGTTATTTCAAGAAATGGAGCCTCCAAAGATGTTTCTTTACCCATGGAGCTTGAGGCTAAAGAAAAGAGTCCATCTAAGAATGAGAAAGATAGCGAAATGTCCCAAGACAGGACTAAACAGGGTTGTGTTGGTGAGTCTGGCAATGATTCTGATGAGGCGGGGTTTAGTGGTGGTCAAGACGAGCGGGGCACGTTGGGAGGTGCCATCACAGAACCATCTACTGAAGGACTGTGCTTCAAGAAAAGGAAAAGGGGTGAGCAGAATGTGGGACTTGGACAAGTTAAAGAAGCTCCACAACAAATCAATGAAACTGCAAAGAATGGAGCATTCAATCAGCAGAAGGGAGATCAAAACCCAAGTTCTACTACTAATAAGCCCGCTGGGAAGCAAGGAAAACAAGATTCTCAACCATCAGATGCTCCCAAAGAAGAATACATTCACGTTAGAGCTCGAAGAGGACAGGCAACAAACAGCCATAGTCTTGCTGAAAGGGTTAGAAGAGAAAAGATAAGTGAAAGAATGAGGCTCCTTCAGGACCTTGTGCCTGGGTGTAGTAAGGTCACTGGCAAAGCTGTAATGCTCGATGAAATCATTAACTATGTACAGTCACTGCAACGGCAAGTTGAGTTTTTGTCAATGAAACTTGCAACGGTTAATCCCAGGCTGGATTTTAACATCGAAGAGCTCCTCGCAAAAGAAATCATTCAATCAAAGGCTGGTCCATCTTTGTTCGGTTTTCCTCCTGATCTGCCTGTGCCTTACCTCCCGCAGCATCGGTCTCACCATGGACTTATTCCGCCTTGTCTTCCTAACATGGGGAGTTCTCCGGACCTGCTACGAAGAACAATTAATTCTCAGCTGACATCACTTGTTGGTGGATTCAAGGAGCCTGTTCAGCTACCAAACCGATGGGAGAATGAACTCCACAATGTTGTTCCGATGAACTTTGATGTGACCGCACCTTCCAGTGGCCAAGATGTTGATGGTTCTACTCCACAATGCAACACCAGAGCAGAACTCTAA 1605 44.49 MNGKDEFEVENRTSDPMSISSGWQFAAAANLTNESVGFVSTGNPSVVSNGDLGVSSCPSTSMSNLFTSTLLNHHTESQNSGFCTTFNEQNSIVASNTTVVDGEGLNSLRSNGDTRTLGMDWNQQNPWMKGIFSGNVPGIFPANLSQLPADSAFIERAARFSCFNSGVFGAPPTGPFGISDSIGIHSGSGFGRQEVISRNGASKDVSLPMELEAKEKSPSKNEKDSEMSQDRTKQGCVGESGNDSDEAGFSGGQDERGTLGGAITEPSTEGLCFKKRKRGEQNVGLGQVKEAPQQINETAKNGAFNQQKGDQNPSSTTNKPAGKQGKQDSQPSDAPKEEYIHVRARRGQATNSHSLAERVRREKISERMRLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKEIIQSKAGPSLFGFPPDLPVPYLPQHRSHHGLIPPCLPNMGSSPDLLRRTINSQLTSLVGGFKEPVQLPNRWENELHNVVPMNFDVTAPSSGQDVDGSTPQCNTRAEL 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8341695 8344368 - ClCG01G007300.1 Cla01g00715 264304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00715 534 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 348 398 IPR011598 GO:0046983
Cla01g00715 534 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 346 417 IPR036638 GO:0046983
Cla01g00715 534 MobiDBLite consensus disorder prediction 302 335 - -
Cla01g00715 534 MobiDBLite consensus disorder prediction 513 534 - -
Cla01g00715 534 MobiDBLite consensus disorder prediction 208 230 - -
Cla01g00715 534 SMART finulus 354 404 IPR011598 GO:0046983
Cla01g00715 534 Gene3D - 345 419 IPR036638 GO:0046983
Cla01g00715 534 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 43 532 IPR024097 GO:0006355
Cla01g00715 534 MobiDBLite consensus disorder prediction 302 329 - -
Cla01g00715 534 MobiDBLite consensus disorder prediction 200 275 - -
Cla01g00715 534 PANTHER TRANSCRIPTION FACTOR BHLH49 43 532 - -
Cla01g00715 534 CDD bHLH_AtBPE_like 338 423 - -
Cla01g00715 534 Pfam Helix-loop-helix DNA-binding domain 351 399 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00715 Cla-Chr1:8341695 Cla05g02367 Cla-Chr5:35260244 2.82E-147 dispersed
Cla06g01463 Cla-Chr6:28183341 Cla01g00715 Cla-Chr1:8341695 6.42E-37 dispersed
Cla10g01647 Cla-Chr10:32114589 Cla01g00715 Cla-Chr1:8341695 1.28E-38 dispersed
Cla01g00715 Cla-Chr1:8341695 Cla02g00509 Cla-Chr2:5100515 4.49E-52 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60382 PF00010 HLH 6.60E-06 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00715 - - csv:101216110 1009.21