Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00725 ATGAATAGTTGTTCATTGTTGGCGGTGGTTTTGTGTGTGGTGGTGGCGGTGGAAGCCGCCATTGAAGCAGTGGAGCTTCCCGGTGGGGTTTTTGGGCCTGAAAGCATCGCCTTTGACTGCCGTGGAGAAGGCCCCTACGCCGGCGTCTCCGATGGCAGAATCCTCAAGTGGAAAGGTCCCGACTTGGGTTGGACTCAATTTGCTTTTACCTCACCCAACAGGGAATTAGGAAAAGATTGCGATGGACAACCCCAAACGGAGGCAGCATGTGGAAGGCCATTAGGGCTAAAATTTCACCCTTCAACTTGTGAGCTTTACATAGCAGATGCTTATTTCGGCCTTCTGGTTGTAGGACCTCAGGGCGGGTTGGCTCGCCAGCTGGCTGCTTCCGCCCAAGGCGTCCCACTCCGCTTCACTAATGCTCTCGATATCGACTCTCGTAACGGTGTTGTTTATTTCACCGATAGTAGTATCTTGTTTCAAAGAAGGGTTTGGGTGTTGTCGATAATGAACGGAGACAAGACAGGGAGGCTACTGAAATACGATCCACACACCAAAAACGTCACCGTATTGCTCAAAGGCCTCGCTTTCCCAAACGGCGTCGCTTTGAACGCCGATTCCTCCTTCCTTCTACTGGCCGAAACCGGCACTCTCCGGGGTCCCAAAACTCACAGCGTGGAGGTATTTGCACAACTCGAACGGTTTCCAGACAACATAAAAAGGACCGATAAGGGTGACTTTTGGATCGCCATGAACACCGGAAGAGGGAAGCTCGAAACTCAAACATGGAAGGGGCTCGACCAGGAAGCGACATTTCAGCATGGCGAGGTGAAGATCCCGTGGAGTCAGGCCGATCCGGTGGCGGTGAAGTTGGACGAGAGGGGGGAAGTGAAGGGGATGGTTGATGGGGGAGAGGGGCAAGCACTGGAGTCAGTGAGTGAGGTTGAAGAAAGTAAAGGAAGGCTGTGGATTGGTTCTGCTGTCAAACCATATAGCCATTCTTTTGGCAGTTGGGGCCTCAAGGAATGTTTTGAGTTAGCGCGTGAGACAGCAAGCGGCTCTAGCAATCTGTTCATTTTGTTCATCTTGTCATTTGATGAACCTGCGGTTTCTAGTTTAATGGAAATTAGGGGGAAAAATGGGTTACTGTTTTGTCTGGCTTTGCTTTGGTTATGGGCTTTTCCAAGTGAGGCTTCAACAAACAAAGATTTTAACCCTGAGGTTCAAGCTTTGATGGGGATCAAAGCTGCTTTGAAGGATCCTCATTCTGTTCTGACTTGGGATGACAATGCTGTGGATGCATGCACTTGGAATTTCATCACTTGCTCTCCCGATAAACTAGTCATTGGCATAGGAGCTCCAAGCCAAAACTTTTCTGGTACACTCTCACCAAGTATTGCAAATTTGACAAACCTCCAATTTCTGCTTCTTCAGAATAACAATATATCAGGAAAAATCCCCAATGAGATTAGCAAGATACCTAAACTTCGCACACTTGATCTTTCAAACAACTTGTTCTCTGGAGAAATTCCCAGCTCTTTCTCCAATATGAAAAGCCTTCAATACCTGAGTTTTGGGATTGGTATCAGGAGACTCAACAATAACACCTTTTCAGGGCCAATCCCAGCATCACTGGCTAACATGACCCAGCTTGCCCTGCTGGACTTGTCCTATAATAATTTGAGCAGTCCTGTGCCCAGACTGCTGGCTAAGACATTTAACTTTACCGGAAACTCTTTGATATGTTCCCCTGGAATTAAGGAAGTATGCTATGGAACAACTCCATTGCCACTTTCTTTTGTTGTTACTAATTCCACATATTCTCAACCTCCTAGGAGACACAAAGGCCAGAGAATTGCCTTAGTCATTGGTCTCAGCTTGCTCTGCATCTGTCTGTTCACTCTTGCATATGGTTTCTTTTTCTGGCGGAAGCATAGGCACAACCAGCAAATATTCTTTGAAGCTAATGATTGGCATCGGGAAGAACATAGCCTAGGGAACATAAAGAGGTTCCAGTTCAGAGAACTTCAGAATGCTACCCACAATTTCAGCAGTAAAAACTTGGTTGGAAAAGGTGGTTTTGGAAATGTATACAGAGGATATCTACAAGATGGCACCATTATAGCTGTAAAGAGACTCAAAGATGGGAATGCTGTGAGAGGAGAGATCCAATTTCAGACTGAAGTGGAAATGATAAGCTTGGCAGTGCATAGGAACCTACTCAGATTATATGGTTTCTGTATGACAGAAACTGAGAGGCTTTTGGTCTATCCATACATGTCGAATGGCAGTGTCGCTACCCGTCTTAAAGCAAAACCAGCTCTGGATTGGGGTACAAGGAAGAGAATTGCCTTGGGAGCTGCTAGGGGTTTGTTATACCTACACGAACAGTGTGATCCAAAAATAATTCACAGGGATGTGAAAGCTGCAAATATACTGCTTGATGATTTCTGTGAGGCAGTGGTGGGTGATTTTGGGCTGGCAAAGCTGTTAGATCACAGAGACTCACATGTCACTACTGCAGTGAGGGGAACTGTTGGGCACATTGCACCAGAGTATCTATCAACAGGCCAATCCTCTGAGAAAACAGATGTTTTCGGGTTTGGAATTCTACTACTTGAGCTCATATCAGGTCAAAGAGCTCTTGAATTTGGAAAAGCAGCAAACCAAAAGGGTGCAATACTGGACTGGGTAAAGAAGATACACCAAGAAAAGAAGCTTGAAATGCTTGTTGACAAAGACTTGAAAAGTAATTATGACCCGATTGAACTTGAAGAAATTGTTCGAGTCGCTCTCTTGTGCATTCAATATCTTCCAAGCCACAGGCCTAAGATGTCTGAAGTGGTCAGGATGCTAGAAGGAGATGGGCTTGCAGAGAAATGGGAAGCTTCCCAAAGGGCAGAAGCAAGCAGGAGCAGAGCCAATGAGTTCTCCTCTTCAGAACGTTACTCTGATCTTACTGATGACTCTTCATTGTTTGCTCAAGCAATAGAGCTCTCGGGACCGAGATAA 3012 46.08 MNSCSLLAVVLCVVVAVEAAIEAVELPGGVFGPESIAFDCRGEGPYAGVSDGRILKWKGPDLGWTQFAFTSPNRELGKDCDGQPQTEAACGRPLGLKFHPSTCELYIADAYFGLLVVGPQGGLARQLAASAQGVPLRFTNALDIDSRNGVVYFTDSSILFQRRVWVLSIMNGDKTGRLLKYDPHTKNVTVLLKGLAFPNGVALNADSSFLLLAETGTLRGPKTHSVEVFAQLERFPDNIKRTDKGDFWIAMNTGRGKLETQTWKGLDQEATFQHGEVKIPWSQADPVAVKLDERGEVKGMVDGGEGQALESVSEVEESKGRLWIGSAVKPYSHSFGSWGLKECFELARETASGSSNLFILFILSFDEPAVSSLMEIRGKNGLLFCLALLWLWAFPSEASTNKDFNPEVQALMGIKAALKDPHSVLTWDDNAVDACTWNFITCSPDKLVIGIGAPSQNFSGTLSPSIANLTNLQFLLLQNNNISGKIPNEISKIPKLRTLDLSNNLFSGEIPSSFSNMKSLQYLSFGIGIRRLNNNTFSGPIPASLANMTQLALLDLSYNNLSSPVPRLLAKTFNFTGNSLICSPGIKEVCYGTTPLPLSFVVTNSTYSQPPRRHKGQRIALVIGLSLLCICLFTLAYGFFFWRKHRHNQQIFFEANDWHREEHSLGNIKRFQFRELQNATHNFSSKNLVGKGGFGNVYRGYLQDGTIIAVKRLKDGNAVRGEIQFQTEVEMISLAVHRNLLRLYGFCMTETERLLVYPYMSNGSVATRLKAKPALDWGTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDFCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELISGQRALEFGKAANQKGAILDWVKKIHQEKKLEMLVDKDLKSNYDPIELEEIVRVALLCIQYLPSHRPKMSEVVRMLEGDGLAEKWEASQRAEASRSRANEFSSSERYSDLTDDSSLFAQAIELSGPR 1003
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8419245 8436574 - ClCG01G007420.2 Cla01g00725 264314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00725 1003 Gene3D Phosphorylase Kinase; domain 1 652 759 - -
Cla01g00725 1003 ProSitePatterns Protein kinases ATP-binding region signature. 689 711 IPR017441 GO:0005524
Cla01g00725 1003 SUPERFAMILY Calcium-dependent phosphotriesterase 23 329 - -
Cla01g00725 1003 Pfam Leucine rich repeat N-terminal domain 405 443 IPR013210 -
Cla01g00725 1003 MobiDBLite consensus disorder prediction 963 985 - -
Cla01g00725 1003 SMART serkin_6 683 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00725 1003 ProSiteProfiles Protein kinase domain profile. 683 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00725 1003 Pfam Protein kinase domain 684 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00725 1003 SUPERFAMILY L domain-like 407 582 - -
Cla01g00725 1003 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672|GO:0006468
Cla01g00725 1003 Pfam Strictosidine synthase-like, N-terminal 19 57 - -
Cla01g00725 1003 Gene3D Transferase(Phosphotransferase) domain 1 760 972 - -
Cla01g00725 1003 Pfam Strictosidine synthase 140 219 IPR018119 GO:0009058|GO:0016844
Cla01g00725 1003 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 382 1003 - -
Cla01g00725 1003 SUPERFAMILY Protein kinase-like (PK-like) 662 953 IPR011009 -
Cla01g00725 1003 Gene3D Ribonuclease Inhibitor 404 592 IPR032675 -
Cla01g00725 1003 Gene3D - 14 337 IPR011042 -
Cla01g00725 1003 MobiDBLite consensus disorder prediction 970 985 - -
Cla01g00725 1003 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 382 1003 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00725 Cla-Chr1:8419245 Cla11g00478 Cla-Chr11:5471599 0 dispersed
Cla10g01536 Cla-Chr10:30698246 Cla01g00725 Cla-Chr1:8419245 3.08E-66 dispersed
Cla11g00130 Cla-Chr11:1650852 Cla01g00725 Cla-Chr1:8419245 2.07E-19 dispersed
Cla01g00725 Cla-Chr1:8419245 Cla05g02357 Cla-Chr5:35159817 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80249 PF00069 Pkinase 2.50E-43 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00725 - - csv:101222667 1128.24