Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla01g00731 | ATGGTTGTTGCTCTTGAAACCACCCGATTCCATGTTCTTGCTGTCGATGATAGCTTCATCGATAGGAAGTTGATTGAACGCCTCCTCAAAACCTCTTCCTATCATGTTACTGCAGTTGATTCCGGTACGAAGGCCTTGGAATTTCTTGGTCTTGTTGAAGATCATGATCACGATGAAGAAACAGACTCCAAAATCGCTCCCTCAAATCATCATCATGAAGAAGTGGATGTAAATTTGATCATCACGGATTACAGTATGCCTGGAATGAGTGGTTACGAACTCCTTAGGAAGATCAAGGAATCGAAATCTCTCAAAGACATACCAGTTGTGATTATGTCCTCTGAGAATGTTCCTTCAAGAATCAATAGATGCTTGGAAGAAGGAGCGGAAGAATTCTTCCTCAAACCAGTTCAATTGTCTGATGTGAGGAAGTTGAGACCTCATTTGATTAAAGAAAAATCCGCCAGGAATTGA | 474 | 41.14 | MVVALETTRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDHDHDEETDSKIAPSNHHHEEVDVNLIITDYSMPGMSGYELLRKIKESKSLKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSARN | 157 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 8525172 | 8525907 | + | ClCG01G007500.2 | Cla01g00731 | 264320 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla01g00731 | 157 | SMART | REC_2 | 10 | 146 | IPR001789 | GO:0000160 | |
| Cla01g00731 | 157 | PANTHER | RESPONSE REGULATOR ARR8, PUTATIVE-RELATED | 3 | 155 | - | - | |
| Cla01g00731 | 157 | Pfam | Response regulator receiver domain | 12 | 144 | IPR001789 | GO:0000160 | |
| Cla01g00731 | 157 | Gene3D | - | 11 | 157 | - | - | |
| Cla01g00731 | 157 | SUPERFAMILY | CheY-like | 9 | 148 | IPR011006 | - | |
| Cla01g00731 | 157 | CDD | REC_typeA_ARR | 12 | 145 | - | - | |
| Cla01g00731 | 157 | ProSiteProfiles | Response regulatory domain profile. | 11 | 150 | IPR001789 | GO:0000160 | |
| Cla01g00731 | 157 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 3 | 155 | IPR045279 | GO:0009736 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla01g00731 | Cla-Chr1:8525172 | Cla10g01535 | Cla-Chr10:30671838 | 2.97E-72 | dispersed | |
| Cla01g00731 | Cla-Chr1:8525172 | Cla06g01631 | Cla-Chr6:29836743 | 4.88E-44 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 60384 | PF00072 | Response_reg | 1.40E-20 | CL0304 | Cla | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla01g00731 | K14492 | - | csv:101210839 | 278.1 |