Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00741 ATGGGCAAGAAGAAGGGCTGGTTTTATTTAGTCAAGAAGCTATTTGTTTCAGAGACACCGCCAAAGCCTGAGAAGAAGCAAAAGAGATGGAAATGGGTGTTTGGAAGGATGAGGAACAAGAGACTAGCCACACTGACAGCACCATCGCCGGCAAAAGTGACAACCAGCCAAGAGGAGGAAGAGGAGAGGAAGCAGGCTCTTTCTGTGGCCATTGCGAGCACTGCAGCGGCCGAGGCGGCAGTTGCAGCAGCTAAGGCTGCTGTTGAGGTTGTTTGGCTCACAGGGACCCCTCAATCTCATCAACAAGAGGCTGCAGATGAAGTCGTTAAGCCTCTCAAGAAGGCCCCTCCATCTGATCTCCTTAAACGTGAAAGGGAAATCCATGATATTGCTGCTATTACTATCCAAACCGCTTTCCGTGGCTTCCTTGCGAGAAAAGCATTGAGAGCATTGAAAGGAATAGTGAGGCTACAGGCAATTATTAGAGGGAGAGCTGTTAGGCGCCAAGCCATTGCCACTTTGAAGTGCTTGCAGTCCATCGTTAGCATACAATCACAAGTCCGTTCAAATAGACTTCATCTTCCTCAAAACACTTTCAATTCTCCTGAAACGAAGCAGTTTCAGAGCTTGAAAGATAAGATCATAAAGGTAGGCCAATTGGATTCGAACGATCAAAGGTGGGATGATAGCCTATTATCAAAAGAAGAAGCAGATTCAGCGTTTTTGAGCAGGAAAGAAGCAGTGATTAGGAGAGAGCGAGTCAAGGAATACTTATTTGCCCACAGGAGGTCTGCAGAATCAGAACGAAAGAAGGTAAGAGGAAGATGGAGATACTGGCTAGACCAATGGGTCGACACCCAACTTTCCAAAAGCAAAGAACTCGAAGATTTGGACTCCATGTTCACCTCAAATCCAAAACACAATGAGATAACAAACGACAGATTCAAAACAAACCCAACAACAAAAAATATGGACAGAACAATAGAAGAACACCCCAACCAATCTCCATCTCAAAAACCAGTTCTGAAAAAGCTCTCTCACCACAAGAAGCAACGTTCATTGGAAGGTGGAATAGACTCAAACAGCTCATTTGCAAGCTCCCCACTGGTGCCAACATACATGGCTGCCACTGAATCAGCGAAGGCAAAAGCAAGGTCCTTGAGCTCCCCCAAGCTAAGGCCAGCAGGGGGATTGGACACATGCTCTGATGGGAATTCTCCATGCAAGACAAAGCAGCTCAGTTTGGTGTCTTCAATGGTGAGTGAAGTTGGAATTAGCAGTGGGAGAAGAGGTTTTCATCAGCAGCAAAGATCACCAGGGCTGAAGGGACTTCCAGGGCCAACAAGATCAAGCAGAACTCTCACCAAGGATTTGAGCATTGATTCTGAGCATTCCTTGCCAAACTGGGATAGACAAACTGCCTTCCAATGA 1431 46.33 MGKKKGWFYLVKKLFVSETPPKPEKKQKRWKWVFGRMRNKRLATLTAPSPAKVTTSQEEEEERKQALSVAIASTAAAEAAVAAAKAAVEVVWLTGTPQSHQQEAADEVVKPLKKAPPSDLLKREREIHDIAAITIQTAFRGFLARKALRALKGIVRLQAIIRGRAVRRQAIATLKCLQSIVSIQSQVRSNRLHLPQNTFNSPETKQFQSLKDKIIKVGQLDSNDQRWDDSLLSKEEADSAFLSRKEAVIRRERVKEYLFAHRRSAESERKKVRGRWRYWLDQWVDTQLSKSKELEDLDSMFTSNPKHNEITNDRFKTNPTTKNMDRTIEEHPNQSPSQKPVLKKLSHHKKQRSLEGGIDSNSSFASSPLVPTYMAATESAKAKARSLSSPKLRPAGGLDTCSDGNSPCKTKQLSLVSSMVSEVGISSGRRGFHQQQRSPGLKGLPGPTRSSRTLTKDLSIDSEHSLPNWDRQTAFQ 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8660538 8663951 + ClCG01G007590.2 Cla01g00741 264330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00741 476 Pfam Protein of unknown function (DUF4005) 321 434 IPR025064 -
Cla01g00741 476 ProSiteProfiles IQ motif profile. 152 179 IPR000048 GO:0005515
Cla01g00741 476 PANTHER IQ-DOMAIN 11 5 462 - -
Cla01g00741 476 MobiDBLite consensus disorder prediction 381 407 - -
Cla01g00741 476 MobiDBLite consensus disorder prediction 309 329 - -
Cla01g00741 476 Gene3D - 27 153 - -
Cla01g00741 476 MobiDBLite consensus disorder prediction 448 476 - -
Cla01g00741 476 Pfam IQ calmodulin-binding motif 131 149 IPR000048 GO:0005515
Cla01g00741 476 MobiDBLite consensus disorder prediction 426 476 - -
Cla01g00741 476 PANTHER IQ-DOMAIN 5-RELATED 5 462 - -
Cla01g00741 476 ProSiteProfiles IQ motif profile. 128 156 IPR000048 GO:0005515
Cla01g00741 476 SMART iq_5 127 149 IPR000048 GO:0005515
Cla01g00741 476 MobiDBLite consensus disorder prediction 305 366 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00741 Cla-Chr1:8660538 Cla10g01493 Cla-Chr10:30165290 8.24E-36 dispersed
Cla01g00741 Cla-Chr1:8660538 Cla09g01991 Cla-Chr9:37477381 5.20E-42 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00741 - - csv:101203390 810.831