Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla01g00756 | ATGGCATCTGGAAGTCCTTATTTTGATGATTTGCGGAGCAAACCAGAGGTTATTGATCCTCCTCAGAATGAAGATATGATGGACATCAGGGAAACCGTGGACGATCCAGTTCAAAATGAACTTAAACCGAACGCTGCTGTCTCCAGCAGCGTTCGCGAGCTTTTGGAATGCCCAGTGTGTTTGAACGCAATGTACCCTCCAATACATCAGTGCTCAAATGGCCACACACTGTGCTCTGGTTGCAAGCCTCGGGTGCACAATCGCTGCCCTACATGTAGGCATGAACTTGGCAATATTAGATGCCTTGCATTGGAGAAGGTGGCCGCATCTCTAGAACTTCCGTGTAAATATCATAGCTATGGTTGCATTGGCATATATCCATATTACAGCAAGGTCAAACATGAATCCCAATGTGTTTATAGACCTTATAGCTGTCCATATGCTGGATCCGAATGTTCAGCCGTCGGTGATATACCCTATTTGGTGGCCCACCTGAAAGACGATCATAAAGTAGACATGCACAGTGGAAGTACATTCAACCATCGTTATGTAAAATCAAACCCACAAGAAGTTGAAAATGCAACGTGGATGCTAACGGTTTTCAGTTGCTTTGGTCAGTACTTTTGCCTGCATTTCGAAGCTTTCCAGCTCGGGATGGCTCCAGTATACATCGCTTTTTTACGGTTCATGGGTGATGATAATGATGCAAAGAACTACAGCTATAGTCTTGAGGTGGGTGGAAATGGGAGGAAGATGATTTGGCAAGGGGTGCCCAGAAGCATCAGGGACAGCCATCGGAAAGTTCGGGACAGCTTCGATGGGCTCATTATCCAACGCAACATGGCTCTCTTCTTCTCTGGTGGGGACCGGAAGGAACTTAAGCTTAGAGTGACTGGTAGAATTTGGAAAGAACAGTGA | 918 | 45.97 | MASGSPYFDDLRSKPEVIDPPQNEDMMDIRETVDDPVQNELKPNAAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYHSYGCIGIYPYYSKVKHESQCVYRPYSCPYAGSECSAVGDIPYLVAHLKDDHKVDMHSGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNDAKNYSYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ | 305 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 8830682 | 8833280 | + | ClCG01G007730.1 | Cla01g00756 | 264345 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla01g00756 | 305 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cla01g00756 | 305 | Pfam | Seven in absentia protein family | 99 | 298 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Cla01g00756 | 305 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 166 | 298 | IPR008974 | GO:0005515 | |
Cla01g00756 | 305 | SUPERFAMILY | RING/U-box | 51 | 98 | - | - | |
Cla01g00756 | 305 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 7 | 305 | - | - | |
Cla01g00756 | 305 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE DIS1 | 7 | 305 | - | - | |
Cla01g00756 | 305 | ProSiteProfiles | Zinc finger RING-type profile. | 57 | 93 | IPR001841 | - | |
Cla01g00756 | 305 | SUPERFAMILY | TRAF domain-like | 110 | 302 | - | - | |
Cla01g00756 | 305 | CDD | Sina | 171 | 299 | - | - | |
Cla01g00756 | 305 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 21 | 108 | IPR013083 | - | |
Cla01g00756 | 305 | CDD | RING-HC_SIAHs | 55 | 93 | - | - | |
Cla01g00756 | 305 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 109 | 165 | IPR013083 | - | |
Cla01g00756 | 305 | ProSiteProfiles | Zinc finger SIAH-type profile. | 110 | 170 | IPR013010 | GO:0008270 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g00756 | Cla-Chr1:8830682 | Cla05g00970 | Cla-Chr5:9788542 | 9.99E-169 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla01g00756 | K04506 | - | csv:101220834 | 642.114 |