Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00758 ATGTCAACCCAGCAGCAAAATTCTGATTCGAATGGCGTTTCAGGCGCCTGTCTCTTTGATCTCCTGTTTCCAGATTCAGAAATGCAAGGCTGGGACTGGAGTCGGATGCCCTCTGGCCCCCAGAAAAGGTTAGAAGATCTGTTGCGGCAGTCTGGTAATAAGTTTTGTGCAGATTGCGGAGCACCGGACCCAAAATGGGTATCGTTAAATTTGGGAGTGTTTATCTGTATAAAGTGTTCTGGAGTACACAGAAGTCTTGGAGTTCATATCTCTAAGGTTTTCTCAGTGAAATTAGATAATTGGACGGATGAACAAGTCAATACTTTGATGAGCATGGGCGGAAACACAGATGTAAACAAGAAGTATGAAGCCGGCATCATCGATGGGAACAGAAAACCAAAACCAGATTCTTGTATAGAGGAGCGCTTCGATTTTATAAGGAGAAAGTATGAACTGCTGCAATTTTATAACGCCACTAGTCAAAATTCTACCGATAACTCATTTAGTAAAAGAAGTTCATCATGCTCCCAAAGTAGTAACCCTTCGAGCAAGAATGGTAGCCACGACAAAAGACACTATGAGAAACAAGCTACTAGGCATCGCATCGGGCATGCATTTCGTAACAGCCGAGTAAGAAGAGATGGTGACCACAAGAGTTTTGACAAGAGCAGCCCTGCAGTCTCAAGACAAGCATCGGTAATAACTGCTTTTTCTATTACAGATTTCCTTCAGCATTTAAGTTATCCAAGTGCAGCAGGTATGGTTGAATTTGTTGGCTTGGTTAAGGTCAATGTGGTTAGAGGCACAAACTTAGCTGTCCGAGATGTGGTGACCAGCGATCCCTATGTAATTCTCACGTTGGGTCATCAATCGGTGAGGACTCGTGTCATAAAGAACAACCTAAACCCAGTTTGGAACGAGAGCCTAATGTTATCGATTCCCGAGCATATCCCTCCGCTAAAGCTGGTAAGCAACAACATATCTTTGGCAAATCTTGTCTATGATAAGGACACATTTTCGACTGATGACTTTATGGGTGAGGCCGAAATCGACATTCAACCGTTGGTCGCTGCGACCAAGGCCTATGAGAAATCCACAATTGATGAATCAATGCAGCTGGGAAAATGGGTGGCAAGTAATGACAATACCTTGGTAAAAGATGGAATCATTAACCTTGTAGATGGAAAGGTCAGACAGGATATATCTCTTAGATTGCAGAATGTGGAGAGAGGTATCCTTGAGATTGAGCTAGAATGCATTCCTCTTACACAATAG 1275 43.06 MSTQQQNSDSNGVSGACLFDLLFPDSEMQGWDWSRMPSGPQKRLEDLLRQSGNKFCADCGAPDPKWVSLNLGVFICIKCSGVHRSLGVHISKVFSVKLDNWTDEQVNTLMSMGGNTDVNKKYEAGIIDGNRKPKPDSCIEERFDFIRRKYELLQFYNATSQNSTDNSFSKRSSSCSQSSNPSSKNGSHDKRHYEKQATRHRIGHAFRNSRVRRDGDHKSFDKSSPAVSRQASVITAFSITDFLQHLSYPSAAGMVEFVGLVKVNVVRGTNLAVRDVVTSDPYVILTLGHQSVRTRVIKNNLNPVWNESLMLSIPEHIPPLKLVSNNISLANLVYDKDTFSTDDFMGEAEIDIQPLVAATKAYEKSTIDESMQLGKWVASNDNTLVKDGIINLVDGKVRQDISLRLQNVERGILEIELECIPLTQ 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8847181 8860091 + ClCG01G007750.2 Cla01g00758 264347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00758 424 SMART arf_gap_3 41 164 IPR001164 GO:0005096
Cla01g00758 424 CDD ArfGap 44 150 - -
Cla01g00758 424 MobiDBLite consensus disorder prediction 208 223 - -
Cla01g00758 424 Pfam C2 domain 260 359 IPR000008 -
Cla01g00758 424 SMART C2_3c 260 364 IPR000008 -
Cla01g00758 424 Gene3D Arf GTPase activating protein 33 164 IPR038508 -
Cla01g00758 424 Pfam Putative GTPase activating protein for Arf 42 157 IPR001164 GO:0005096
Cla01g00758 424 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 1 224 IPR044518 GO:0005096|GO:0005543
Cla01g00758 424 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 249 424 IPR044518 GO:0005096|GO:0005543
Cla01g00758 424 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD11-RELATED 1 224 - -
Cla01g00758 424 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD11-RELATED 249 424 - -
Cla01g00758 424 MobiDBLite consensus disorder prediction 161 184 - -
Cla01g00758 424 CDD C2_ArfGAP 258 411 - -
Cla01g00758 424 ProSiteProfiles C2 domain profile. 238 366 IPR000008 -
Cla01g00758 424 PRINTS HIV Rev interacting protein signature 93 114 IPR001164 GO:0005096
Cla01g00758 424 PRINTS HIV Rev interacting protein signature 72 89 IPR001164 GO:0005096
Cla01g00758 424 PRINTS HIV Rev interacting protein signature 53 72 IPR001164 GO:0005096
Cla01g00758 424 Gene3D C2 domain 258 421 IPR035892 -
Cla01g00758 424 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 256 359 IPR035892 -
Cla01g00758 424 ProSiteProfiles ARF GTPase-activating proteins domain profile. 41 163 IPR001164 GO:0005096
Cla01g00758 424 MobiDBLite consensus disorder prediction 161 224 - -
Cla01g00758 424 SUPERFAMILY ArfGap/RecO-like zinc finger 41 157 IPR037278 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00758 Cla-Chr1:8847181 Cla05g02675 Cla-Chr5:37929342 8.41E-172 dispersed
Cla11g01802 Cla-Chr11:31674527 Cla01g00758 Cla-Chr1:8847181 1.74E-24 dispersed
Cla01g00758 Cla-Chr1:8847181 Cla03g00588 Cla-Chr3:6693553 2.12E-40 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00758 K12486 - csv:101215531 693.73