Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00771 ATGTCTTCTTCTCTTTCATGGTTCTTCTTCTTTTCCCTCTCCTTTACGTTCTCCGGTACGGCCGCCTCGGTTTCCGATGATGCAATGTCGCTCCTCATGTTTAAGGGCTCGATTTCGCTCGGAGGCTCTGATGTTCTTCGTGGCTGGAATTTGTCTCTTTCTCACTGCCAGTGGTTTGGAGTTACTTGCGATGGTGTTAACGGTAGAGTTGTTGCGCTGAATATCAGTGGAAATGGTGGTGTTCTGGCGGCGGGTTCTTCACTGGTTGGGAAGTTGAATCCGGCGATTGGAAATCTTGTTGAGCTTCGCGTTTTGTCGCTTCCGAATAATTTGATGTACGGGGAGATTCCGGGGAGTGTTGGTAAGCTTCAGTCGTTGGAGGTTCTAGAGCTTCAGGGGAACAATTTCTCTGGAGAGATTCCAAATCAGATAAGTTCACTTCGATCTCTTCGCCTGCTTAATTTGTCTGATAACTCGTTTTCTGGCTCGATTCCGGGTAAATTGATCGGCTCGACGCGATTAGAAGCAATTGATTTGTCGTACAATCAATTATCTGGTAGTATTCAAGTTGTTGATAATAGATGCGGTGCTTTGAATCATTTGAGGCTTTCGCATAACTTTCTGACTAATAACATTCCGGCGGAGATTGGACAATGTTGGAAACTCAGGACTCTGTTACTCGATGGTAATATATTAGAGGGGCAAATTCCGGCTGAGATCGGCCAAATTTCAGAACTCAGAATTCTTGATGTTTCTAGGAATAGCCTTACCGATTCGATTCCAAAAGGGCTTGGTAATTGCCGGAAGTTGTCACAGATCGTTTTGACGAATTTGAACGATATCAATCCCGACTACGATAGTTTAAGAGGGGAATTCAACGCCTTCAATGGAGGTATTCCTTCTGAGTTGTTATTGCTTCCAAGTCTGCAAGTTTTATGGGCACCGAGAGGGAATTTTAATGGCGAATTGCCGATTAATTGGAGTTCTTCATGCTCGCTTAGAGTTCTCAATTTAGGGCAAAATTACATCACTGGTACAATACCCGAATCGATTGGGAAATGTGCGAATCTAACTTACCTGGATTTATCTTCAAACAAGCTTCAAGGTAACCTCCCCTCCCAGCTTCGAGTTTCATGTATGGCGTATTTCAATGTTAGCCAGAACAAAATTTCTGGTGTTCTTCCCAGATTTGAGAAAGACAGTTTCTGTACGAACTTGATTCCACACGAACCAGCTCCCAGATTCTTAGATCAGGAAGACGATTGGAATTCTTACTTCAATTTTCCTGTTTGGGATTTCCCGAGATTAAATGATAATCTCATAATTTCCCATGATTTTAGCTGGAATAGGTTCAGTGGCTCATTAACTTCAGTCAAAGTGGGAGAAGAGCTTTTGGCTAATGGCCGCAAGTTCTCATACAAATTGTTGCTTAATAGCAACCAGTTCAATGGATCACTTCCCATTGATCTGGTCTCGAACTGTAACGATATGAAGGGTGTTTCTGTTAACTTGAGTTCAAACTTAGTATCAGGTGAGATTTCTGATGCATTTTTTCTCCATTGTCGACAAATGATAGAGTTTGAGGCAGCAAGCAATGAATTAGATAACTCGATTGGACCTCAAATTGGCGACTTGCAGATGCTTCTTCGTCTCGACTTGAGAGGGAATAGATTGTCTGGAGTTTTACCTGATCAGTTGGGAAACTTGCAGAGTTTGAAATGGATGCTTTTGGGGGGAAACAATTTGACTGGAGAGATTCCATCTCGACTTAGTCGATTGACTTCTCTCGTGAGTTTAGATCTTTCTCGGAACATGTTTACAGGAGTTATCCCTGAAAGCTTCTCATATGCTTCAAGACTTGAGATTCTGTTGCTTGATCATAATAGGTTAACTGGGGAAATACCAGCATCTTTCTCTGCCCTTTCACATCTCACTAAATTGGATGTCTCTTTTAACAACCTTTCTGGCCACATTCCTCATCTTCAGCACACATTTGACTGCATTTACTTTGGTGGGAATAAGTTTCTGCATCCATGCCCAGATTCATACTCCGACTCCCCAGCTGGACTTCCGGTTCCTCTCGACGTTGCAAAGTGGAAGAGACGAAGAAAGTTTATGTCCATGATAATCGCTGTGGCTGCCTCCTCAAGTCTAATTTGCTTACTCATAATGATAGCTGTTATCATCATTGTTAAGAGAAGGCTAGGTAAACAAAATACGTTAAAGAAGAAACAAGTGGTGACTTTCTCAGATGCTCCTTCCGATCTGAATTATGATAACGTGGTCCGAGCTACCGAAAATTTCAGCCTTCGTTACCTTATCGGTACCGGTGGCTTTGGATCAACGTACAAGGCTGAACTGCCCTCAGGTTTCCTTGTTGCTGTAAAGAGACTGTCCATTGGTAGGTTTCAAGGAGGCATTCAACAATTTGACGCAGAAATTCGAACTTTGGGAAGAATACGACACAAAAACCTTGTAACTCTTCTCGGGTATTATGTTGGAGAGGCTGAAATGTTCTTAGTTTACAACTATCTTTCTGGTGGGAACCTTGATACTTTCATCCACAAAAAATCTTGCAAACACGTAAAGCACTCAGTGATCCACAAGATCACTTTGGACATAGCGAGGGCTCTTGCATACCTTCATTACTCCTGTGATCCTAGGATTGTTCATAGAGACATCAAGCCTAGTAACATCTTGCTTGATGAAGACCACAACACCTACATATCAGATTTTGGGTTGGCAAGGCTTCTTGAGGTTTCAGAGACTCATGCCACAACAGATGTGGCAGGAACATTTGGATATGTCGCACCTGAATATGCTACAACTTGCAGGGTCTCGGATAAGGCGGATGTTTATAGCTTTGGAGTTGTGCTACTAGAGTTGCTTTCTGGAAAAAGATCACTCGATCGATCCTTTTCCGACTTTGGGAACGGATTTAACATTGTTACATGGGCAAATATGCTGATCAAGGAAGGTCGTTTTTCCGAGCTTTTCACTCCTGAACTTTGGGAAATGGGACCTAAGGAACACTTACTTGGAATGTTAAAGCTCGCTTCCAATTGCACAGTTGAAATTCTCGCTCTTCGACCGTCGATGAAACAGGTTGTCGAGACACTGAAACAGTTGTAA 3132 42.66 MSSSLSWFFFFSLSFTFSGTAASVSDDAMSLLMFKGSISLGGSDVLRGWNLSLSHCQWFGVTCDGVNGRVVALNISGNGGVLAAGSSLVGKLNPAIGNLVELRVLSLPNNLMYGEIPGSVGKLQSLEVLELQGNNFSGEIPNQISSLRSLRLLNLSDNSFSGSIPGKLIGSTRLEAIDLSYNQLSGSIQVVDNRCGALNHLRLSHNFLTNNIPAEIGQCWKLRTLLLDGNILEGQIPAEIGQISELRILDVSRNSLTDSIPKGLGNCRKLSQIVLTNLNDINPDYDSLRGEFNAFNGGIPSELLLLPSLQVLWAPRGNFNGELPINWSSSCSLRVLNLGQNYITGTIPESIGKCANLTYLDLSSNKLQGNLPSQLRVSCMAYFNVSQNKISGVLPRFEKDSFCTNLIPHEPAPRFLDQEDDWNSYFNFPVWDFPRLNDNLIISHDFSWNRFSGSLTSVKVGEELLANGRKFSYKLLLNSNQFNGSLPIDLVSNCNDMKGVSVNLSSNLVSGEISDAFFLHCRQMIEFEAASNELDNSIGPQIGDLQMLLRLDLRGNRLSGVLPDQLGNLQSLKWMLLGGNNLTGEIPSRLSRLTSLVSLDLSRNMFTGVIPESFSYASRLEILLLDHNRLTGEIPASFSALSHLTKLDVSFNNLSGHIPHLQHTFDCIYFGGNKFLHPCPDSYSDSPAGLPVPLDVAKWKRRRKFMSMIIAVAASSSLICLLIMIAVIIIVKRRLGKQNTLKKKQVVTFSDAPSDLNYDNVVRATENFSLRYLIGTGGFGSTYKAELPSGFLVAVKRLSIGRFQGGIQQFDAEIRTLGRIRHKNLVTLLGYYVGEAEMFLVYNYLSGGNLDTFIHKKSCKHVKHSVIHKITLDIARALAYLHYSCDPRIVHRDIKPSNILLDEDHNTYISDFGLARLLEVSETHATTDVAGTFGYVAPEYATTCRVSDKADVYSFGVVLLELLSGKRSLDRSFSDFGNGFNIVTWANMLIKEGRFSELFTPELWEMGPKEHLLGMLKLASNCTVEILALRPSMKQVVETLKQL 1043
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8977306 8980437 - ClCG01G007870.1 Cla01g00771 264360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00771 1043 Pfam Protein kinase domain 773 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00771 1043 ProSitePatterns Protein kinases ATP-binding region signature. 774 796 IPR017441 GO:0005524
Cla01g00771 1043 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 5 1043 - -
Cla01g00771 1043 SMART serkin_6 768 1043 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00771 1043 ProSiteProfiles Protein kinase domain profile. 768 1043 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00771 1043 Pfam Leucine rich repeat 332 367 IPR001611 GO:0005515
Cla01g00771 1043 Pfam Leucine rich repeat 125 184 IPR001611 GO:0005515
Cla01g00771 1043 Pfam Leucine rich repeat 595 654 IPR001611 GO:0005515
Cla01g00771 1043 CDD STKc_IRAK 774 1043 - -
Cla01g00771 1043 SMART LRR_typ_2 545 568 IPR003591 -
Cla01g00771 1043 SMART LRR_typ_2 123 146 IPR003591 -
Cla01g00771 1043 SMART LRR_typ_2 195 219 IPR003591 -
Cla01g00771 1043 SMART LRR_typ_2 243 267 IPR003591 -
Cla01g00771 1043 SMART LRR_typ_2 593 616 IPR003591 -
Cla01g00771 1043 SMART LRR_typ_2 641 667 IPR003591 -
Cla01g00771 1043 SMART LRR_typ_2 147 171 IPR003591 -
Cla01g00771 1043 SUPERFAMILY Protein kinase-like (PK-like) 746 1040 IPR011009 -
Cla01g00771 1043 Gene3D Transferase(Phosphotransferase) domain 1 845 1043 - -
Cla01g00771 1043 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 5 1043 - -
Cla01g00771 1043 Gene3D Ribonuclease Inhibitor 194 283 IPR032675 -
Cla01g00771 1043 Gene3D Ribonuclease Inhibitor 284 417 IPR032675 -
Cla01g00771 1043 Gene3D Ribonuclease Inhibitor 422 688 IPR032675 -
Cla01g00771 1043 ProSitePatterns Serine/Threonine protein kinases active-site signature. 889 901 IPR008271 GO:0004672|GO:0006468
Cla01g00771 1043 SUPERFAMILY L domain-like 88 661 - -
Cla01g00771 1043 Gene3D Ribonuclease Inhibitor 26 142 IPR032675 -
Cla01g00771 1043 Gene3D Ribonuclease Inhibitor 143 193 IPR032675 -
Cla01g00771 1043 Gene3D Phosphorylase Kinase; domain 1 730 844 - -
Cla01g00771 1043 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00771 Cla-Chr1:8977306 Cla07g01548 Cla-Chr7:32678207 0 dispersed
Cla01g00771 Cla-Chr1:8977306 Cla01g01761 Cla-Chr1:32517304 4.32E-138 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80250 PF00069 Pkinase 5.10E-44 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00771 - - cpep:111809121 1803.49