Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00803 ATGAGTGAAACCATCGAGAATTACTTGAGAAAGAACTTCGACCTCGATTCCAAGAGTCCGTCAGAGGAGGCTCAAATGCGATGGCGATCCGCCGTTTCTATTGTCAAGAATCGCCGCCGTAGGTTTCGTATGGTTGCTGATCTCGAAAAGCGAGCTCAGGCTGAGGAAAAGCGCAGGAAACTCCAGGAAAAGATACGAGTAGCTCTATACGTACAAAAAGCAGCATTGCATTTCATTGATGGTAGGTATTCTGATTCCCTATTACAGTATCTTATATTGTTGGATATTTGTTCGCAGTTTCAAGATTATATATTAATACGCACATGCATTTTTTATCGTTATGTACCAGCCGGGAAGCGAGGTGATTACAAGCTCTCCACAGAAGTTAGGGAAGCTGGTTTTGGAGTTGAACCCGATGCATTAGCATCCATGGTTCAAACCCACAACACGAAGAGTTTGGAACATTATGGGGGCGTTGGCGGATTGGTAAGAGACCTAAACGTTTCTTTGAAAGATGGAATTGTTACAAGTGAAATACCTTCAAGGCAGAACATATACGGCATCAACCGTTATGTTGAGAAGCCTTCAAGAGGCTTTTGGATGTTTGTATGGGAAGCCCTGCATGATTTGACTCTCATCATTCTCTTGGTTTCTGCTGTGGTTTCCATTGGCGTTGGAAATGCAACTGAAGGTTGGCCTAAAGGCATGTACGATGGACTTGGAATAATAATGAGTATTTTTTTGGTCGTGATAGTAACGGCAATCAGTGACTATAATCAGTCCTTGCAATTTAAGGACCTGGAGAAGCAGAAGAAAAACATTATCATTCAAGTTACTCGAGATGGATGCAGACAGAAGGTTTCTATTTACGACTTGGTGGTTGGAGATATTGTTCATTTGTCTATTGGAGATCAAGTCCCTGCTGATGGCATTTTGGTGTCAGGCTACAACTTATCACTTGACGAATCGAGCTTATCAGGTGAAAGTGAACCCGTAAATGTAGATGACAATAGGCCTTTTCTTCTAGCAGGGACCAAAGTGCAGGATGGATCTGGAAAAATGCTAGTTGCCTCAGTTGGCATGAGAACTGAATGGGGAAGATTGATGGTCACTTTGAGTGAAGGAGGAGATGACGAAACACCACTTCAGGTAAAGCTTAATGGGGTTGCGACAATCATTGGAAAGATTGGCTTGGTATTCGCGGTGTTAACATTCATTGTTCTGATCTCAAGGTATTTTGTGTATAAAGCATTACACAATCAGATTGGGCACTGGTCCTCCAAAGATGCATCAACGCTTCTGAATTACTTTGCCATTGCAGTAATTATAATTGTTGTTGCAGTTCCAGAAGGATTGCCTCTGGCCGTGACACTAAGTCTTGCTTTTGCCATGAAAAGGTTAATGAAGGATAAGGCACTCGTGAGGCATCTCTCTGCTTGTGAGACTATGGGTTCTGCAACCTGCATTTGCACCGATAAAACAGGTACATTGACAACAAACCATATGGTCGTCGACAAAATGTGGATCTGTGAAGAAACGAGGACAATAAAAAGTTCCCACGACGAAACTGCTTTGAAAAATTCTGTAAATGAAACGGTATACAATCTCCTTATACAATCTATATTTCAAAATACCAGCTCAGAGGTGGTGAAAGGCAAAGACGGGAGAAACACCATTTTAGGCACTCCAACTGAGACTGCATTGCTAGAATTTGGCTTGCTTTTGGGTGGTACTTTTGGTACATTGAATGATGAGTATAAGATCGTCAAAGTGGAGCCATTCAATTCAAATAGAAAGAAAATGTCTGTTCTTGTGGCTCTTCCCGGTGGTGGCTTTCGCGCATTTTGCAAGGGAGCATCAGAAATCATTTTAGCTATGTGTGACAAGGTTCTCAGTTCTAATGGAGAAGCGTTGCCTCTTTCAGACGAACAAAGAACAAACATCTCTAATATCATTAATAGCTTTGCCAACGATGCGCTTAGAACTCTATGCTTCGCCTACAAGGATATAGAAGCTCTTTCAGCACCAGAGAAAATTCCAGATGATGATTTTACTTTAATAGCTGTTGTTGGCATTAAAGATCCTGTACGTCCGGGTGTAAAGGAGGCAGTTCAGGCTTGTTTGGCTGCTGGAATTACTGTAAGGATGGTAACTGGGGATAACATCAATACGGCTAAAGCCATAGCCAAAGAGTGTGGCATTTTGACAGAAGGTGGTTTAGCAATAGAAGGGCCAGAGTTCCGCAACAAGAGCCAAGATGAAATGGAGAAGTTAATACCAAAACTCCAGGTGATGGCTCGATCTTCTCCTCTTGACAAGCATACGTTGGTAGGACAGTTAAGGAAAACGTTCAAAGAAGTGGTGGCTGTCACAGGTGATGGGACTAATGATGCCCCTGCTTTGCATGAGGCAGACATTGGATTAGCCATGGGTATTGCGGGAACAGAGGTTGCAAAAGAAAATGCGGACGTAGTCATAATGGATGATAACTTCACAACTATTGTTAATGTTGCAAGATGGGGACGTGCAGTCTACATCAACATTCAGAAGTTCGTTCAGTTCCAGCTTACAGTCAACGTAGTCGCTCTCATGCTCAATTTTATATCTGCATGCGTTTCAGGGTCTGCTCCTCTGACGGCTGTTCAAATGCTATGGGTGAACTTGATAATGGACACGCTGGGAGCTCTAGCTTTGGCCACAGAGCCTCCCAACGAGGGGCTGATGCAAAGAAAACCAATTGGTAGAAACGTCAATATCATCACTGGGATTATGTGGAGAAACATCATCGGTCAGAGCATCTATCAAATCACAGTCTTACTAATCCTCAGATTCGAAGGAAAACGCCTGCTCAATCTCACTGGTCCTGATTCAAGCATCCTTCTCGATACATTCATTTTCAACTCCTTCGTATTCAATGAAATAAACAGCCGTGACATGGAGAAGATAAACGTGTTCAAAGGGATATTTGGGAGTTGGGTATTCATTGGAGTGATGGCATCGACAGTAGGATTCCAGATCATAATAGTGGAATTTCTTGGGACATTCGCAGAAACAGTAGGATTAAGCTGGAGATTATGGGTAATCAGCATTATAATTGGAGCTGTGAGTTTGTCAATAGCAATGGGGCTGAAATGCATTCCTGTTTCAAACTCTAAAACCGCATGCCACTTCCACGATGGTTATGAGCCACTCCCCACTGGTCCTGACTTGGCTTGA 3216 42.82 MSETIENYLRKNFDLDSKSPSEEAQMRWRSAVSIVKNRRRRFRMVADLEKRAQAEEKRRKLQEKIRVALYVQKAALHFIDGRYSDSLLQYLILLDICSQFQDYILIRTCIFYRYVPAGKRGDYKLSTEVREAGFGVEPDALASMVQTHNTKSLEHYGGVGGLVRDLNVSLKDGIVTSEIPSRQNIYGINRYVEKPSRGFWMFVWEALHDLTLIILLVSAVVSIGVGNATEGWPKGMYDGLGIIMSIFLVVIVTAISDYNQSLQFKDLEKQKKNIIIQVTRDGCRQKVSIYDLVVGDIVHLSIGDQVPADGILVSGYNLSLDESSLSGESEPVNVDDNRPFLLAGTKVQDGSGKMLVASVGMRTEWGRLMVTLSEGGDDETPLQVKLNGVATIIGKIGLVFAVLTFIVLISRYFVYKALHNQIGHWSSKDASTLLNYFAIAVIIIVVAVPEGLPLAVTLSLAFAMKRLMKDKALVRHLSACETMGSATCICTDKTGTLTTNHMVVDKMWICEETRTIKSSHDETALKNSVNETVYNLLIQSIFQNTSSEVVKGKDGRNTILGTPTETALLEFGLLLGGTFGTLNDEYKIVKVEPFNSNRKKMSVLVALPGGGFRAFCKGASEIILAMCDKVLSSNGEALPLSDEQRTNISNIINSFANDALRTLCFAYKDIEALSAPEKIPDDDFTLIAVVGIKDPVRPGVKEAVQACLAAGITVRMVTGDNINTAKAIAKECGILTEGGLAIEGPEFRNKSQDEMEKLIPKLQVMARSSPLDKHTLVGQLRKTFKEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADVVIMDDNFTTIVNVARWGRAVYINIQKFVQFQLTVNVVALMLNFISACVSGSAPLTAVQMLWVNLIMDTLGALALATEPPNEGLMQRKPIGRNVNIITGIMWRNIIGQSIYQITVLLILRFEGKRLLNLTGPDSSILLDTFIFNSFVFNEINSRDMEKINVFKGIFGSWVFIGVMASTVGFQIIIVEFLGTFAETVGLSWRLWVISIIIGAVSLSIAMGLKCIPVSNSKTACHFHDGYEPLPTGPDLA 1071
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9377849 9385392 - ClCG01G008160.2 Cla01g00803 264392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00803 1071 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 146 1048 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Cla01g00803 1071 PANTHER CATION TRANSPORTING ATPASE 112 1055 - -
Cla01g00803 1071 SUPERFAMILY Calcium ATPase, transmembrane domain M 154 1049 IPR023298 -
Cla01g00803 1071 Gene3D - 205 1045 - -
Cla01g00803 1071 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 761 879 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla01g00803 1071 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 587 736 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla01g00803 1071 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 242 554 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla01g00803 1071 Pfam haloacid dehalogenase-like hydrolase 488 805 - -
Cla01g00803 1071 Pfam Cation transporter/ATPase, N-terminus 154 222 IPR004014 -
Cla01g00803 1071 Pfam E1-E2 ATPase 276 469 - -
Cla01g00803 1071 Pfam Cation transporting ATPase, C-terminus 876 1044 IPR006068 -
Cla01g00803 1071 Gene3D - 500 695 IPR023299 GO:0000166
Cla01g00803 1071 SFLD p-type atpase 472 843 IPR044492 -
Cla01g00803 1071 PANTHER CALCIUM-TRANSPORTING ATPASE 112 1055 - -
Cla01g00803 1071 PANTHER CALCIUM-TRANSPORTING ATPASE 7 84 - -
Cla01g00803 1071 Gene3D - 487 836 IPR023214 -
Cla01g00803 1071 Gene3D - 173 373 - -
Cla01g00803 1071 PRINTS P-type cation-transporting ATPase superfamily signature 688 699 - -
Cla01g00803 1071 PRINTS P-type cation-transporting ATPase superfamily signature 490 504 - -
Cla01g00803 1071 PRINTS P-type cation-transporting ATPase superfamily signature 815 827 - -
Cla01g00803 1071 PRINTS P-type cation-transporting ATPase superfamily signature 710 720 - -
Cla01g00803 1071 PRINTS P-type cation-transporting ATPase superfamily signature 791 810 - -
Cla01g00803 1071 PRINTS P-type cation-transporting ATPase superfamily signature 321 335 - -
Cla01g00803 1071 ProSitePatterns E1-E2 ATPases phosphorylation site. 492 498 IPR018303 -
Cla01g00803 1071 SUPERFAMILY Calcium ATPase, transduction domain A 275 369 IPR008250 -
Cla01g00803 1071 SFLD C1.7: P-type atpase like 472 843 - -
Cla01g00803 1071 SUPERFAMILY HAD-like 489 896 IPR036412 -
Cla01g00803 1071 CDD P-type_ATPase_Ca_PMCA-like 182 924 - -
Cla01g00803 1071 SMART Cation_ATPase_N_a_2 153 227 IPR004014 -
Cla01g00803 1071 Gene3D - 20 80 - -
Cla01g00803 1071 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 496 700 IPR023299 GO:0000166
Cla01g00803 1071 Coils Coil 44 65 - -
Cla01g00803 1071 Pfam Ca2+-ATPase N terminal autoinhibitory domain 10 52 IPR024750 GO:0005516
Cla01g00803 1071 PRINTS H+-transporting ATPase (proton pump) signature 823 848 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla01g00803 1071 PRINTS H+-transporting ATPase (proton pump) signature 648 666 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla01g00803 1071 PRINTS H+-transporting ATPase (proton pump) signature 791 807 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla01g00803 1071 PANTHER CATION TRANSPORTING ATPASE 7 84 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00803 Cla-Chr1:9377849 Cla05g02106 Cla-Chr5:32672272 0 dispersed
Cla09g00071 Cla-Chr9:677972 Cla01g00803 Cla-Chr1:9377849 5.07E-14 dispersed
Cla01g00803 Cla-Chr1:9377849 Cla10g01496 Cla-Chr10:30188099 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00803 K01537 - csv:101203529 1865.51