Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00805 ATGGCTCGAGGTAGAAAGCGGCGCCGACCGGAGACTGTTACGGAGGGTCGGGACACTGAAGGGAACCTCGATAATACTGAAACCAAGCCCCGGGTTGGCCATGGAGGGACTGAAGTTGGAATAATTGACAAGGGTTTTTTGGGCGACGGCGAAAACGAGGTGCAATGGGGGGCGAGGACAGAAGAGGGGGATGGAGGATTGGTTTCGGAAAGTAAACACGGCGAAACCCTGCTGCGGAATGAAGGGGAGTACAATGGTGAAGAGCAGAAGGGTTCTGTTGCTGGGAAAAACGGCGAATTAGAATGTGAGGTTTCTATCAGAAGTCCGACGAGGAGTTTGAGAAAGAAGGCGAGAGTTTCGTACAACGAGGAGGTTTACGAGTTTGATGAGGATGATGACGAAGAGGAGATTCCTTTCAAGAAGCCTGGGCGAAGGGGTAGGAAAAAGAAAGTATTGTCTTCGAATCGGAATGTACCTAACGTGGAAGAAAAACGGAGTCCTGCGAATGAAGAAGATGATGTTAGGGAGAAAAATTCTGGTGTTTCTGGAAATAAGAGAGGTTCTTATAGAAGGAAACGTGGTGGAAGATATGCGCTAAGAAAGCAAAGTGTTGTTAAGCCGGAGGGCGAGAAGAAAATTAATAAGTTTGATCCCGAATTCATCGCGGAGATATCTTTAATGTGCCATCAGTGCCAGAGGAATGATAAAGGCCGTGTCGTACGTTGTACTAATTGTAGGAGGAAGCGATATTGTATCCCTTGTTTGCAGAATTGGTACCCTCATACATCAGAAGAGGCAATTGCAGAATCTTGCCCGGTTTGCTCTGGGAATTGCAATTGTAAAGCATGTTTGCGTTTAGATGTTCCTGTTAAAAATTTGAAGAACATGGTACCAGTAGTCACAGAAGACAGCAAGGTTGAGCATGCAAAATATGTACTACGTAAACTTCTACCATTTCTAAAATGGCTAAATGAAGAACAGATGTTGGAGAAAAAACAAGAGGCTACAAGGCTAGGTTTGCCTCTTCATGATCTAAAGGTGGAGAAGGTAGATTGTGAAGACAACGAGCGAATGTACTGCGACATCTGTAGAACATCAATTTTTGATTTTCATCGAACGTGCATTTCTTGTTCTTTTGACCTTTGTATCAACTGTTGCCGGGAAATCCGTGCAGGAGATATGCGGTGTTGTGAGAAAAAAAAGATAATACCATATATTAATCGAGGGTTTGAGTACTTGCATGGTGAAGGGCCGAAAAAAGTAAAAAGAGAAAAAGCCAAAGCGCTTGCTGAGTCTTGTCCTAGAGATGACGAGGAATTAGCATTCATATGGAGAGCAGAAAAAGATGGAAGGATTCCTTGTCCACCATCCAACTTGGGTGGTTGTGGTAATGGTTTTCTAGAGTTAAGATGTATATTGGAAGATTCAATCTCAAAATTGGTGGATGAGGGTGAGGAAATTGCTAGAACCCACAACATAATGGATGTGGATGAAACTGCAGGAAAGTGGTGCTCATGCTTTAACTCGGCTGGTGAAGTTAATCTTGAGAGTGGTATGTTGAAGAAAGCTGCTTCCAGACAAGGTTCAAGTGATAATTATTTATATTGTCCTAGGGGCAGGGATATTCAACCTGGCCAGATAGAGCATTTTCAGTGGCATTGGAGCAAAGGTGAGCCGGTGGTTGTTAGCAATGTTCTTGAAACTACATCAGGTTTGAGCTGGGAACCCCTTGTCATGTGGCGTGCCTTCCGTCAAATTACGCATACAAAACATGGTCAACAGTTGGAAGTTAAGGCCATTGATTGCTTAGATTGGTGTGAGCTTGATGTCAATATCCACAAATTCTTTACCGGTTATACAGATGGTCAGTTTGATGCAAAATTGTGGCCTCGGATACTTAAACTCAAGGACTGGCCTCCATCTAATCATTTTGAGAAATGCTTGCCCCGTCATAATGCTGAATTTATCAGTTGCTTACCTTTTAAGGAATATACACATCCTTCTAAAGGCAACCTAAATCTTGCTGTTAAATTGCCGGAAAAATCTCTAAAACCTGATATGGGACCTAAGACATATATTGCTTATGGAGTTGCACAGGAGCTTGGTCGTGGGGATTCTGTTACCAAGCTTCACTGTGATATGTCTGATGCAGTAAATGTTCTTACTCATGCTACCAATGTCACACTTGAGCCCGAGCATTTACATAGTATTAAAGAATTAAAAGCAAAACATCTTGCACACGACCAGGAAGAAATTTATGGTGCTATGACCGATACTAATATTGTCGATGGAAACAAGTTTTGCAATGACCCCTGTAGCATGACTGAAAATGGAAAGGAACATGTTTGTGAAGTTGGTCACCAAAACAATAATGAGGTCTTGGAGGATGCATCTAACCCTAAAAGAGGCGATGAGGAAGAGGGCGATCTTCGAAATTTGAATGAACACAATGGAACTGAGCCTGATGAGTCTGTAAAGGTGAATCTAGCCGAAGAAACTTGTAGTGAAGCGAAAATATCAGAACAAATGGAAAGTTTGGAGGCGTCTGATGGTGGTGCACTGTGGGACATTTTTCGTAGGCAAGACGTCCCCCTACTGCAGCAATATCTCAACAAGCATTTCAGAGAATTTAGGCACATTCATGCTGGTCCTGTTCCACAGGTGTTTCATCCCGTGCATGATCAGTCATTTTATTTGACTTTGGAACACAAAAGAAAGCTCAAGGAGGAATATGGAATTGAACCTTGGACATTTGTCCAAAATCTGGGAGATGCTGTCTTTATTCCTGCTGGGTGTCCTCATCAAGTCAGAAACTTAAAGTCATGCATAAAGGTTGCTCTGGACTTTGTGTCACCTGAGAATGTTGGAGAGTGCATCCACTTGACTGAAGAATTTCGTAGGCTTCCTTCAAATCATTGGGCTAAGGAGGACAAGTTGGAGATCAAGAAAATGAGTGTTTATGCTATGAAAGCGACAATTGCTTGTTTGAAGGGAGAGAGCAACCTCAGGGGTGATCCTGTGACCAGAAGAGACTGTGCACAAGGTTTGGAGCAAATCGGACTCGAGCGTCAGGAGCCAAGATCAAAGCTGCAGAATTCTTCAGGTATGTATGATATGAATGATTGA 3126 42.99 MARGRKRRRPETVTEGRDTEGNLDNTETKPRVGHGGTEVGIIDKGFLGDGENEVQWGARTEEGDGGLVSESKHGETLLRNEGEYNGEEQKGSVAGKNGELECEVSIRSPTRSLRKKARVSYNEEVYEFDEDDDEEEIPFKKPGRRGRKKKVLSSNRNVPNVEEKRSPANEEDDVREKNSGVSGNKRGSYRRKRGGRYALRKQSVVKPEGEKKINKFDPEFIAEISLMCHQCQRNDKGRVVRCTNCRRKRYCIPCLQNWYPHTSEEAIAESCPVCSGNCNCKACLRLDVPVKNLKNMVPVVTEDSKVEHAKYVLRKLLPFLKWLNEEQMLEKKQEATRLGLPLHDLKVEKVDCEDNERMYCDICRTSIFDFHRTCISCSFDLCINCCREIRAGDMRCCEKKKIIPYINRGFEYLHGEGPKKVKREKAKALAESCPRDDEELAFIWRAEKDGRIPCPPSNLGGCGNGFLELRCILEDSISKLVDEGEEIARTHNIMDVDETAGKWCSCFNSAGEVNLESGMLKKAASRQGSSDNYLYCPRGRDIQPGQIEHFQWHWSKGEPVVVSNVLETTSGLSWEPLVMWRAFRQITHTKHGQQLEVKAIDCLDWCELDVNIHKFFTGYTDGQFDAKLWPRILKLKDWPPSNHFEKCLPRHNAEFISCLPFKEYTHPSKGNLNLAVKLPEKSLKPDMGPKTYIAYGVAQELGRGDSVTKLHCDMSDAVNVLTHATNVTLEPEHLHSIKELKAKHLAHDQEEIYGAMTDTNIVDGNKFCNDPCSMTENGKEHVCEVGHQNNNEVLEDASNPKRGDEEEGDLRNLNEHNGTEPDESVKVNLAEETCSEAKISEQMESLEASDGGALWDIFRRQDVPLLQQYLNKHFREFRHIHAGPVPQVFHPVHDQSFYLTLEHKRKLKEEYGIEPWTFVQNLGDAVFIPAGCPHQVRNLKSCIKVALDFVSPENVGECIHLTEEFRRLPSNHWAKEDKLEIKKMSVYAMKATIACLKGESNLRGDPVTRRDCAQGLEQIGLERQEPRSKLQNSSGMYDMND 1041
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9447525 9457098 + ClCG01G008180.2 Cla01g00805 264394

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00805 1041 MobiDBLite consensus disorder prediction 789 825 - -
Cla01g00805 1041 MobiDBLite consensus disorder prediction 7 27 - -
Cla01g00805 1041 CDD cupin_RmlC-like 879 950 - -
Cla01g00805 1041 ProSiteProfiles Zinc finger RING-type profile. 228 275 IPR001841 -
Cla01g00805 1041 MobiDBLite consensus disorder prediction 1 97 - -
Cla01g00805 1041 SUPERFAMILY Clavaminate synthase-like 546 986 - -
Cla01g00805 1041 Pfam JmjC domain, hydroxylase 852 949 IPR003347 -
Cla01g00805 1041 MobiDBLite consensus disorder prediction 109 193 - -
Cla01g00805 1041 Gene3D Cupin 537 974 - -
Cla01g00805 1041 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 225 286 IPR018866 -
Cla01g00805 1041 ProSiteProfiles JmjC domain profile. 667 966 IPR003347 -
Cla01g00805 1041 MobiDBLite consensus disorder prediction 65 86 - -
Cla01g00805 1041 MobiDBLite consensus disorder prediction 163 180 - -
Cla01g00805 1041 MobiDBLite consensus disorder prediction 797 825 - -
Cla01g00805 1041 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 77 999 IPR045109 GO:0032454|GO:0033169
Cla01g00805 1041 SMART cupin_9 648 966 IPR003347 -
Cla01g00805 1041 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ25-LIKE 77 999 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00805 K15601 KDM3; [histone H3]-dimethyl-L-lysine9 demethylase [EC:1.14.11.65] - csv:101221956 1741.09
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00805 Cla-Chr1:9447525 Cla05g00091 Cla-Chr5:871282 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g683 . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00805 Cam01g0827 Cec01g0825 Cco01g0857 Clacu01g0820 Cmu01g0788 Cre09g1717 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005729 2 1 1 2 2 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 2 3 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60389 PF02373 JmjC 2.90E-13 CL0029 Cla TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00805 Cla_Chr01 FPKM 8.492069 8.096613 4.253822 4.541938 6.50738 6.714538 6.544237 0.514257 0.597787 0.488137