Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00808 ATGTCCGGTTCTGATGGCGTCAACAACAACAATGGCGCCATAATCGACCATTCTCAACAACAGAGACATCATCAACAACAACAGCAGCAGCAACTACAGGGGAACCAGTCTAACAACAATGGTGCTTTGGCCGTCAAAAAACCCCCCTCCAAGGACCGCCACAGCAAGGTCGACGGCCGTGGCCGCCGTATTCGTATGCCCATCGTTTGCGCCGCTCGTGTTTTCCAACTCACCCGCGAATTAGGCCACAAATCCGACGGCCAGACTATCGAATGGCTCCTTCGTCAAGCAGAGCCGTCGATTATCGCCGCCACTGGCACCGGCACCACTCCGGCTAGCTTCTCCACCATCTCCGCCTCACTCCGAGGCGCTCCTGCCGCTGCTTCCTCTTCTTCTTCCTCGCTCGACCATAAACCCCTTTTGGCTCCGGCGCCCTTCATTTTAGGCAAACGCGTCAGAACCGACGACGATGGAGCTAATAAAGACGACGGCGGTGGTATTTCGGTCGGTCCCACTATTGGTTCGATTATGGGTCCGGCTGCAGCAGGTGGGTACTGGGCGATTCCCGCGAGGTCGGATTTCGGACAGGTGTGGAGCTTTGCAGCGGCGGCGCCGGAGATGGTGATTCAACCAACCGCCGTTTCCCACCAGGCGTCGCTGTTCGTTCAGCAGCAATCGATGGGAGAGGCGTCGGCGGCGAAAGTGGGAAATTACCTTCCGGGGCATCTGAATTTGCTTGCTTCTTTATCAGGTGGACCGGGAAGTTCCGTCCGAAGAGACAACGACCACCGTTAA 795 56.98 MSGSDGVNNNNGAIIDHSQQQRHHQQQQQQQLQGNQSNNNGALAVKKPPSKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTISASLRGAPAAASSSSSSLDHKPLLAPAPFILGKRVRTDDDGANKDDGGGISVGPTIGSIMGPAAAGGYWAIPARSDFGQVWSFAAAAPEMVIQPTAVSHQASLFVQQQSMGEASAAKVGNYLPGHLNLLASLSGGPGSSVRRDNDHR 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9508678 9509472 + ClCG01G008210.1 Cla01g00808 264397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00808 264 Pfam TCP family transcription factor 50 133 IPR017887 -
Cla01g00808 264 MobiDBLite consensus disorder prediction 1 62 - -
Cla01g00808 264 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 261 IPR005333 GO:0003700
Cla01g00808 264 PANTHER TRANSCRIPTION FACTOR TCP21-RELATED 1 261 - -
Cla01g00808 264 MobiDBLite consensus disorder prediction 47 62 - -
Cla01g00808 264 ProSiteProfiles TCP domain profile. 50 104 IPR017887 -
Cla01g00808 264 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00808 Cla-Chr1:9508678 Cla11g01311 Cla-Chr11:26626250 1.02E-36 dispersed
Cla01g00808 Cla-Chr1:9508678 Cla02g01393 Cla-Chr2:28388336 4.21E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60390 PF03634 TCP 7.90E-32 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00808 K16221 - csv:101214586 389.808