Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00812 ATGATGCCCATTTTGGACCACCACCATGATCACAATAATCAACCCCTCCTCCTCCCCGCCGATGATCTCGCCGCCGCTGTCCCCGCCCCCGCCTTCCATCGCAAGAAACGGATGCCCAGAAACCGCCGCCGCTCTTCTTCTAATCTTCCCTTCTTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAATAACACTCCCCATCTCCCTCCTCCCCGGGTAATTGATCCAAGGAACCTGAAGTTTCTTTTCCAGAAGGAGCTTAAGAACAGTGATGTTAGCTCTCTGAGGAGAATGATACTCCCAAAGAAAGCAGCTGAAACTCACCTTCCAGCTTTGGAGTCTAAAGAAGGAATTATAATCACCATGGATGACTTGGATGGGGTGCATGTTTGGAACTTCAAATATAGGTTTTGGCCAAATAACAATAGTAGAATGTATGTACTTGAAAATACTGTTATCACAGGAGACTTTGTCAATGCCCATGGCTTACATCTAGGAGATTTCATCATGGTTTACCAAGATTGTGAAGAACATAACTATGTGATTCAAGCAAAAAAGGCTTGCGAGCAAGAAATATATTCCGACATAGCAACCAACGTCATGATCAACGACGACATTGTGTTTCAAGACTACGATGCTAGCAAAGCGGCCAGCTCCATATACGTGCCTAGTCCAACCATGGAAGATCCTGTGTCATCATTCATCTATGACACTAGTTCTGCCTTCGACAACGATTCGCCTTTCGACTTTATGAGTGGATCAATGACCAACTACTCAAAAATGGGAGGCCTCGAAGGCTTTGGATCGGTCGAGAACTTGTCTCTCGACGACTTCTACTAA 840 45.12 MMPILDHHHDHNNQPLLLPADDLAAAVPAPAFHRKKRMPRNRRRSSSNLPFFPSSSSSSSSSNNTPHLPPPRVIDPRNLKFLFQKELKNSDVSSLRRMILPKKAAETHLPALESKEGIIITMDDLDGVHVWNFKYRFWPNNNSRMYVLENTVITGDFVNAHGLHLGDFIMVYQDCEEHNYVIQAKKACEQEIYSDIATNVMINDDIVFQDYDASKAASSIYVPSPTMEDPVSSFIYDTSSAFDNDSPFDFMSGSMTNYSKMGGLEGFGSVENLSLDDFY 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9566809 9570531 - ClCG01G008250.2 Cla01g00812 264401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00812 279 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR FUS3 32 279 - -
Cla01g00812 279 SMART B3_2 83 188 IPR003340 GO:0003677
Cla01g00812 279 Pfam B3 DNA binding domain 83 183 IPR003340 GO:0003677
Cla01g00812 279 SUPERFAMILY DNA-binding pseudobarrel domain 81 187 IPR015300 -
Cla01g00812 279 MobiDBLite consensus disorder prediction 31 73 - -
Cla01g00812 279 MobiDBLite consensus disorder prediction 44 68 - -
Cla01g00812 279 ProSiteProfiles B3 DNA-binding domain profile. 83 188 IPR003340 GO:0003677
Cla01g00812 279 Gene3D - 79 199 IPR015300 -
Cla01g00812 279 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 32 279 IPR044800 GO:0003700
Cla01g00812 279 CDD B3_DNA 81 186 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00812 Cla-Chr1:9566809 Cla09g00858 Cla-Chr9:8807601 8.25E-38 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60392 PF02362 B3 8.10E-16 CL0405 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00812 - - csv:101222512 403.675