Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00816 ATGAAGCTTTCAACATCAGGGTTTGGTCAGCAGGATCACGAAGGAGGGGAAAAGAAATGCTTGAATTCAGAGCTATGGCATGCATGCGCGGGGCCCCTTGTGTCCCTCCCAACTGCTGGGACTCGGGTTGTCTACTTCCCTCAGGGTCACAGCGAACAGGTTGCTGCCACGACCAATAAAGAAGTTGATGGGCACATACCCAATTACCCGAACCTACCTCCCCAGTTGATATGTCAACTTCACAACGTTACAATGCATGCAGATGTGGAAACGGATGAAGTATATGCCCAGATGACATTACAGCCTCTGACTGCACAAGAGCAAAAGGATACATTTCTACCCATGGAATTGGGGATTCCTAGTAGACAGCCAACAAATTACTTTTGCAAAACGTTGACAGCAAGTGATACAAGCACCCATGGAGGATTTTCTGTACCTCGTCGTGCTGCTGAGAAAGTTTTTCCTCCACTGGATTTTTCACAACAGCCACCAGCACAAGAGCTGATTGCAAGGGACCTTCATGATGTCGAATGGAAGTTTAGGCATATTTTTCGAGGACAGCCAAAACGACACCTTCTTACAACTGGTTGGAGTGTGTTTGTTAGTGCCAAAAGATTGGTTGCTGGGGATTCTGTACTTTTTATATGGAATGAAAAAAATCAGCTTCTTTTGGGTATACGCCGTGCCACAAGACCACAAACTGTGATGCCCTCTTCTGTTTTGTCAAGTGATAGCATGCACATTGGACTCCTTGCTGCTGCAGCTCATGCTGCTGCAACGAATAGCTGTTTCACAGTGTTCTACAACCCCAGGGCTAGCCCATCAGAGTTTGTCATCCCTCTGACAAAATATGTTAAAGCTGTATTTCATACCCGTGTTTCAGTAGGAATGCGTTTTCGGATGCTTTTTGAGACTGAAGAGTCAAGTGTTCGAAGGTACATGGGTACTATAACTGGAATAAGTGATCTTGACCCTGTTCGCTGGCCGAATTCTCATTGGCGTTCTGTCAAGGTGTTGCAGCTTTATCTCCACGACAGTTCCATGAAAACACTTGCTAAATTTACAATGTCATTATTTCTCCTAACTTTATCTAATAGCACATGCTTAGATTGTGGCCTCAAATCGGAAATGCCAGCATCTGAAGCACTCGGAAATTTAGAACAAACTATTAATGGCACTGTTTGTCCTAAATTTTGTAGGTACATGTTCCTTTTTTTGGAAGTAGGGTGGGATGAGTCAACAGCTGGGGAGAGGCAGCCAAGGGTATCGTTGTGGGAAATTGAGCCTTTGACTACATTTCCTATGTATCCATCTCTGTTTCCACTTAGACTGAAACGTCCATGGCATCCTGGAGTCTCTTCTGTTCATGATAACAGAGATGATGCATCTAATGGCTTAATGTGGCTTCGGGGAGGAGTTGGGGAACAGGGTCTACACTCACTGAATTTGCAATCTGTGGGCCCCCTGCCCTGGTTGCAGCAGAGACTTGACTCTTCCATGTTTGGAAATGATCATAACCAACAGTATCAAGCCATGTTGGCAGCTGGAATGCCAAACCTTGGAGGTGTTGATATGCTGAGACAGCAAATTATGCATCTTCAACAACCTTTCCAATATATTCAACAGGCAGGCTTCCATAACTCTCTGTTGCAGATGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAATTGGTTCAACAATCTATGCCTCAGAACATCCTGCAGGCACCAAACCAAGTTTTGGCAGAAAATCTACCTCAACACATTCTCCAGCAAACTCTACAAAATCAACCTGAGGATCTGCCAAACCAGCAACAGCATACTTATCATGATTCCATTCAGGTTCAAAGCAATCAATTTCATCAGGGTGGGCATTCAAATGTGCCATCACCCACATTTCCCAGAACAGACCTTATGGATTCCAACACAAATTACTCAGATTCCATTACCTCTAGAAGGAATATACTTGCATCATCATGTGCTGAAGGGACGGGAAATCTTTCCAATATCTACAGAAGTGGGCAGTCAATCCTAACTGAGCATTTACCTCAACAATCTCCTGTTTCTAAGAATGCTCATTCACAGGTTGATGCTCACTCAAACTCAATGTCATTTCCACCATTTTCTGGTAGAGACTCAATTCTGGAGCTGGGAAATTGTAATTCAGATTCTCCAAGTCCTACACTTTTTGGTGTAAATATTGATTCATCTGGACTTCTACTTCCCTCTAATGTGCCCACTTACGCTTCTCCATCAATTGGTCCTGATTCATCCTCAATGCCACTGGGAGATTCTGGATTTCAGAATTCTCTGTACAGTTGTGTCCAAGACTCTTCTGAGTTGTTGCACAACTCAGGGCAAGTTGATCCATCGAATCCAACTCGGACGTTTGTTAAGGTTTACAAATCTGGATCTGTTGGGCGCTCACTAGACATCTCCCGGTTCAGCAGCTATCAGGAGCTGCGAGAGGAGCTGGCTCAGATGTTTGGAATCGAGGGACAGTTGGAAGACCCTCATAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGATGTACTTCTCCTTGGAGATGACCCTTGGGAGGCATTTGTGAATAATGTCGGGTATATCAAGATACTTTCTCCCCGGGACTTTCAGAAACTAGGGGAACAGGCAATCGAGTCCTTTAACCCTATCGTTGGTCAGCGACTTACCAGTGGTGGCAATGAAGCTGGAAATGTTTCAGGACTACCATCTGTTGGTTCGCTAGAATATTGA 2775 44.9 MKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNKEVDGHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTAQEQKDTFLPMELGIPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVLQLYLHDSSMKTLAKFTMSLFLLTLSNSTCLDCGLKSEMPASEALGNLEQTINGTVCPKFCRYMFLFLEVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGVSSVHDNRDDASNGLMWLRGGVGEQGLHSLNLQSVGPLPWLQQRLDSSMFGNDHNQQYQAMLAAGMPNLGGVDMLRQQIMHLQQPFQYIQQAGFHNSLLQMQQQQQQQQQQQQQQQLVQQSMPQNILQAPNQVLAENLPQHILQQTLQNQPEDLPNQQQHTYHDSIQVQSNQFHQGGHSNVPSPTFPRTDLMDSNTNYSDSITSRRNILASSCAEGTGNLSNIYRSGQSILTEHLPQQSPVSKNAHSQVDAHSNSMSFPPFSGRDSILELGNCNSDSPSPTLFGVNIDSSGLLLPSNVPTYASPSIGPDSSSMPLGDSGFQNSLYSCVQDSSELLHNSGQVDPSNPTRTFVKVYKSGSVGRSLDISRFSSYQELREELAQMFGIEGQLEDPHRSGWQLVFVDRENDVLLLGDDPWEAFVNNVGYIKILSPRDFQKLGEQAIESFNPIVGQRLTSGGNEAGNVSGLPSVGSLEY 924
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9602547 9627998 - ClCG01G008290.2 Cla01g00816 264405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00816 924 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cla01g00816 924 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Cla01g00816 924 Pfam AUX/IAA family 796 884 IPR033389 -
Cla01g00816 924 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 338 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cla01g00816 924 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 407 899 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cla01g00816 924 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Cla01g00816 924 Gene3D - 396 434 - -
Cla01g00816 924 Gene3D - 292 353 - -
Cla01g00816 924 Gene3D - 126 230 IPR015300 -
Cla01g00816 924 CDD B3_DNA 127 228 IPR003340 GO:0003677
Cla01g00816 924 ProSiteProfiles PB1 domain profile. 799 883 IPR000270 GO:0005515
Cla01g00816 924 SMART B3_2 128 230 IPR003340 GO:0003677
Cla01g00816 924 Gene3D - 795 888 - -
Cla01g00816 924 PANTHER AUXIN RESPONSE FACTOR 8 407 899 - -
Cla01g00816 924 SUPERFAMILY CAD & PB1 domains 792 873 - -
Cla01g00816 924 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Cla01g00816 924 PANTHER AUXIN RESPONSE FACTOR 8 1 338 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00816 Cla-Chr1:9602547 Cla03g00607 Cla-Chr3:7181134 1.35E-87 dispersed
Cla01g00816 Cla-Chr1:9602547 Cla01g02432 Cla-Chr1:37937835 1.23E-90 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60394 PF02309 AUX_IAA 3.90E-08 CL0072 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00816 - - csv:101208098 975.696