Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00840 ATGTCAAAAGAGGAGGTTATTATTTTGGACTGTTTGATCAGCCCATTTTGCAATAGGGTTAAGATTGCTTTGAATGAGAAGGGAGTGAGTTATGAGAGTAGGGAAGAGGATTTGTTTGGTTTGAAAGGTGGGAAAAGTGAGTTGTTGCTCAAATCAAACCCTATTTATAAGAAAGTGCCTGTTCTCTTGCATAATGGCAAGCCACTGAATGAAAGTTCTATTATTGTCAATTATATTGATGAGACTTGGGCATCTTCTTCCCCACTTCTTCCTTTTTCGCCCTACGAAAGAGCTCAAGCTCGGTTCTGGATTGACTACATCGATAAAAAGGTATTTGATGTGGGTTCCAAGATTTGGAAGAGCAATGGAGAAGAGCAAGAGGCAGCCAAGAAAGAGTTGATAGAGATTTTGAAGCAATTGGAGGAAGCTTTAGGTGACAAAGATTTCTTTGGAGGTGAAAGGTTTGGGATTGTGGATGTGATTGCAATCCCATTCACAAGTTGGTTCAATGCTTATGAGAAAGTTGGGAACTTCAAAGTGGAAGAACATTGCCCTAAAATCTCAGCTTGGGAAAAGAGATGTTTGCAAAAGGAGACTGTTGCAAGTGTTATCCCTTGCCCTGAGAAGATCTATAACTTTCTCACCTCCATGAGAAACAACCTTGGCCTTGAATAG 675 40.3 MSKEEVIILDCLISPFCNRVKIALNEKGVSYESREEDLFGLKGGKSELLLKSNPIYKKVPVLLHNGKPLNESSIIVNYIDETWASSSPLLPFSPYERAQARFWIDYIDKKVFDVGSKIWKSNGEEQEAAKKELIEILKQLEEALGDKDFFGGERFGIVDVIAIPFTSWFNAYEKVGNFKVEEHCPKISAWEKRCLQKETVASVIPCPEKIYNFLTSMRNNLGLE 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10176907 10178337 - ClCG01G008550.1 Cla01g00840 264429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00840 224 CDD GST_C_Tau 94 217 IPR045074 GO:0004364|GO:0006749
Cla01g00840 224 Gene3D Glutaredoxin 2 92 - -
Cla01g00840 224 SFLD Main (cytGST) 2 221 - -
Cla01g00840 224 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 93 213 IPR010987 -
Cla01g00840 224 Pfam Glutathione S-transferase, N-terminal domain 12 82 IPR004045 -
Cla01g00840 224 Pfam Glutathione S-transferase, C-terminal domain 122 197 IPR004046 -
Cla01g00840 224 SFLD Main.3: Omega- and Tau-like 2 221 IPR045073 -
Cla01g00840 224 Coils Coil 123 146 - -
Cla01g00840 224 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 6 216 IPR045073 -
Cla01g00840 224 SUPERFAMILY GST C-terminal domain-like 81 220 IPR036282 -
Cla01g00840 224 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 87 IPR004045 -
Cla01g00840 224 Gene3D - 93 224 - -
Cla01g00840 224 PANTHER GLUTATHIONE S-TRANSFERASE, AMINO-TERMINAL DOMAIN PROTEIN 6 216 - -
Cla01g00840 224 SUPERFAMILY Thioredoxin-like 12 111 IPR036249 -
Cla01g00840 224 CDD GST_N_Tau 6 83 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00840 Cla-Chr1:10176907 Cla07g01007 Cla-Chr7:26425770 9.38E-94 dispersed
Cla01g00840 Cla-Chr1:10176907 Cla05g02445 Cla-Chr5:35895016 3.81E-38 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00840 K00799 - csv:101213628 408.297