Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00841 ATGTCGCCATCTCTTCCACTTCACTTCCTCTTCACTGTTGCAGCAGCTCTCACATCTCCGGTTACCTCCCATTTCTCTTCTACAACCTCCTCGCCGTCGCCGGAATCCGCCCCGTCGCTCTCCGAGTGGAGATCTGCTCGTGCCACCTACTACGCCGCCTCCGACCCTCGCGATGCGGTGGGCGGAGCCTGTGGATATGGCGATTTAGTGAAGGCAGGCTATGGCATGGCGACAGTGGGACTCAGCGAGTCGCTATTTGAACGCGGACAGATCTGCGGTGCCTGCTTTCAGCTCCGGTGTGTTGAGGACCTCCGGTGGTGTATTCCCGGTACCTCTATCATTGTCACTGTTACTAATTTCTGTGCGCCTAATTATGGCTTCACAGCTGAGGGCGGAGGCCATTGTAACCCTCCTAATAAGCATTTTGTGCTCCCTATTGAGGCGTTTGAGAAGATCGCTATCTGGAAGGCGGGAAACATGCCTGTTCAGTATCGGAGAGGTAGACAAGACTTTAGGTTGGCTTGGAGTAGCTGGGCAAACAGCGGTATTTGTATGCCAACTTTTCCCACTTTCCTGAATGGAAGACCTCACGAGAGAATAAGAGCTTCAAGGGGTAATGATGCAAAGAGATCTTTTGCCATTAGTTCAGTTAGATATCCTCAAAACCCTGGTATTGATAGTGATTCATTTGCGCCTGGGCATCCCATGATCAAATGCCGAAAGGAAGGGGGTATTCGGTATACGGTTTCTGGGTACGGCATCTACCTCTCAGTGTTGATAAGTAATGTTGCAGGCGCTGGAGATGTGAGTGCTGTAAAGATCAAGGGGTCGAGAACCGGTTGGCTTCCAATGGGTCGTAATTGGGGGCAAAACTGGCACATAAATGCTGATTTGAACCATCAAGCCCTTTCCTTCGAAGTCACCAGCAGTGATGGAGTAACAATTACATCCTACAATGTTGCTCCCAAGGATTGGAACTTTGGGCAGACTTTTGAAGGCAAGCAATTTGAATCTTGA 1017 50.25 MSPSLPLHFLFTVAAALTSPVTSHFSSTTSSPSPESAPSLSEWRSARATYYAASDPRDAVGGACGYGDLVKAGYGMATVGLSESLFERGQICGACFQLRCVEDLRWCIPGTSIIVTVTNFCAPNYGFTAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRGRQDFRLAWSSWANSGICMPTFPTFLNGRPHERIRASRGNDAKRSFAISSVRYPQNPGIDSDSFAPGHPMIKCRKEGGIRYTVSGYGIYLSVLISNVAGAGDVSAVKIKGSRTGWLPMGRNWGQNWHINADLNHQALSFEVTSSDGVTITSYNVAPKDWNFGQTFEGKQFES 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10187801 10192465 - ClCG01G008560.2 Cla01g00841 264430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00841 338 PANTHER EXPANSIN-A15 25 166 IPR002963 GO:0009664
Cla01g00841 338 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 61 166 IPR007112 -
Cla01g00841 338 Pfam Lytic transglycolase 79 164 IPR009009 -
Cla01g00841 338 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 254 333 IPR007117 -
Cla01g00841 338 Pfam Expansin C-terminal domain 245 322 IPR007117 -
Cla01g00841 338 PANTHER EXPANSIN-A13 236 337 - -
Cla01g00841 338 SMART dpbb_1 78 164 IPR007112 -
Cla01g00841 338 PANTHER EXPANSIN-A13 25 166 - -
Cla01g00841 338 PANTHER EXPANSIN-A15 236 337 IPR002963 GO:0009664
Cla01g00841 338 SUPERFAMILY PHL pollen allergen 241 333 IPR036749 -
Cla01g00841 338 Gene3D - 27 167 IPR036908 -
Cla01g00841 338 PRINTS Expansin signature 132 149 IPR002963 GO:0009664
Cla01g00841 338 PRINTS Expansin signature 100 111 IPR002963 GO:0009664
Cla01g00841 338 PRINTS Expansin signature 149 162 IPR002963 GO:0009664
Cla01g00841 338 PRINTS Expansin signature 73 87 IPR002963 GO:0009664
Cla01g00841 338 PRINTS Expansin signature 113 123 IPR002963 GO:0009664
Cla01g00841 338 SUPERFAMILY Barwin-like endoglucanases 42 166 IPR036908 -
Cla01g00841 338 Gene3D - 245 336 IPR036749 -
Cla01g00841 338 PRINTS Expansin/Lol pI family signature 42 57 IPR007118 GO:0005576
Cla01g00841 338 PRINTS Expansin/Lol pI family signature 82 100 IPR007118 GO:0005576
Cla01g00841 338 PRINTS Expansin/Lol pI family signature 157 173 IPR007118 GO:0005576
Cla01g00841 338 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00841 Cla-Chr1:10187801 Cla11g00693 Cla-Chr11:8177039 4.12E-75 dispersed
Cla01g00841 Cla-Chr1:10187801 Cla02g01959 Cla-Chr2:34678805 1.48E-68 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00841 - - csv:101206236 315.849