Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00843 ATGGAAGTTCGTTCACTAGATGTGAAGAAAGATATATTTCGACCTCGAGATAATAATGAAGGACTTCTTGGTCCTGAAGGACCATATCTTAATGCGATTGGTGCACTTATGTATCTTGCTAATAATACAAGATCAGATATTGCATTTTCAAGGAACTGCTATATCTTGGCGATCAGTGAAACATACCATAACAGTAAAAATCCTCCAACAACATTATACGAAGACAACACAGCATGTATAGCCCAAATCAAAGGAGGATATATTAAAGGAGATAGAACGAAGCATATTTCACCAAAACTTTTCTACACTCATGATCTTGAAGAAAATGGCGACATCACTGTACAACAAATTTGTTCGAGGATAACTTGGCAGACTTATTTACAAAATCATTACCAACTGCAACTTTTGAAATATTGGTGCAAAACATTGGAATGCGGCGATTCAGAGATCTCAAATGATGTTCCTATGAGGGGAAGCAAATTTCCCCTTTTCCTGCCCTATTCTCTGCCCTTCCCCTCCTCCCCGATTCTGCTCTCTCTTCGCCGCCGACCACGCCTCTCTCCGCTGCCGTCAAAGTTGTTCGATCCCCCTCCCTTCTCCGACCACCCCTCTCCAACGCCGCCTGTTGGTTTGAAAGGTTTCATGAGGCAAGCGGAGCGAACTGGAAAATATGGAACTCCAAGGCTCCACTACCTCCAGGAATTAGTGAATGAATTTCAGAGCTCAACTAGTCAAGAAACAAAAGAAAAAGTTGTTGCGAATTTGGCAAACTTTTCTTATGATCCTTACAATTATTCCTTCTTACGTCAGCTCAATGTTCTGGAGCTTTTCTTGGACTGCACAACAGAGCCAAACGAGAAGCTTATCGAATTTGGTATTGGCGGGATCTGCAATTCTTGTGTTGACCCTGCTAATGCTTCTATTATAACTCAGTGTGGTGGAATTCCCCTCATCATTGAATGCTTGTCAAGTCCTGTAACAAACACTGTGAATTATGCACTTGGCGCCTTATATTACCTCTGCAATGCATTGAATAAGGAAGAGATTATGAAACCAGAAGTGGTAGATGTCATAAAGAGATATGCAGTGGCTGAGAACTCGATGCCCTTGATGGCGAATTGGGTGGGAATATGCATTGATAGTCAGATTCATTTTCTGATGGGAAGAAGATTCTTTGGATGCACCTAA 1188 41.67 MEVRSLDVKKDIFRPRDNNEGLLGPEGPYLNAIGALMYLANNTRSDIAFSRNCYILAISETYHNSKNPPTTLYEDNTACIAQIKGGYIKGDRTKHISPKLFYTHDLEENGDITVQQICSRITWQTYLQNHYQLQLLKYWCKTLECGDSEISNDVPMRGSKFPLFLPYSLPFPSSPILLSLRRRPRLSPLPSKLFDPPPFSDHPSPTPPVGLKGFMRQAERTGKYGTPRLHYLQELVNEFQSSTSQETKEKVVANLANFSYDPYNYSFLRQLNVLELFLDCTTEPNEKLIEFGIGGICNSCVDPANASIITQCGGIPLIIECLSSPVTNTVNYALGALYYLCNALNKEEIMKPEVVDVIKRYAVAENSMPLMANWVGICIDSQIHFLMGRRFFGCT 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10215573 10223989 + ClCG01G008580.2 Cla01g00843 264432

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00843 395 SUPERFAMILY ARM repeat 231 361 IPR016024 -
Cla01g00843 395 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 7 216 367 IPR042462 -
Cla01g00843 395 Pfam Armadillo/beta-catenin-like repeat 303 341 IPR000225 GO:0005515
Cla01g00843 395 SMART arm_5 302 342 IPR000225 GO:0005515
Cla01g00843 395 SMART arm_5 261 301 IPR000225 GO:0005515
Cla01g00843 395 Gene3D - 227 374 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00843 K24825 ARMC7; armadillo repeat-containing protein 7 - csv:101211784 289.271
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00843 Cla-Chr1:10215573 Cla10g00872 Cla-Chr10:19988621 1.17E-20 dispersed
Cla01g00843 Cla-Chr1:10215573 Cla05g01700 Cla-Chr5:28752470 3.42E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g716 . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00843 Cam01g0869 Cec01g0868 Cco01g0895 Clacu01g0857 Cmu01g0826 Cre09g1684 . . . . . . . . . . . Bda13g01816 Bpe14g00062 . . Bma02g00563 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002963 1 7 1 2 1 1 2 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 9 9 1 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00843 Cla_Chr01 FPKM 2.151394 3.145097 2.789723 2.581909 1.731566 1.744363 1.529556 2.417952 1.851608 1.949454