Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00846 ATGGCTTTCCAGAAGATCAAGGTCGCCAATCCCATCGTTGAGATGGACGAAATGAGCATTTCTGTTTTCTTTTCTTTGGTGGTGGTTAGCTGCCTCTGTTCAAATGGGAAGTCGTGGGAAACTTTCCCCTGTTTTGGCCATAATGTGGATCAGTGTTCTGTTTCTTCTCCGTTAGACATCATGTGTTATGTGGAAGAGTATAAGTTTTTCGTAACAGTTCCTTTGGGTTTGCAGAAATTGGGAGATTTGAATGTTATTAGCTTTTTCTCTCGAGATGAAATGACTCGAGTTATCTGGGAATCAATTAAGAATAAGCTCATTTTCCCCTTCTTGGAATTGGACATCAAGTATTTTGACCTCGGCCTTCCACACCGTGATGCCACAGATGATAAAGTTACAATTGAAAGTGCAGAAGCTACTTTAAAGTACAATGTAGCAATCAAATGTGCAACAATCACTCCAGATGAGGCACGTGTTAAGGAATTTGGCTTGAAGCAGATGTGGAGAAGTCCGAATGGGACAATCAGGAATATTCTGAATGGTACTGTTTTCAGAGAACCAATTCTTTGCAAAAATGTTCCTCGCCTTGTACCAGGTTGGACGAAGCCTATCTGTATTGGAAGACATGCTTTTGGTGATCAATACAGAGCTACTGATACAGTTATTAAAGGACCTGGAAAATTGAAATTAGTTTTTGAGGGGCAAGAGACGCAAGAGATAGAGGTTTTCAATTTTACTGGTGCTGGAGGAGTAGCATTAGCCATGTATAACACTGATGAGTCCATCCGCTCCTTTGCTGAGGCATCAATGAACACTGCTTATGAGAAGAAATGGCCTCTTTACCTAAGCACAAAAAATACTATTCTAAAGAAATATGATGGAAGATTCAAGGATATATTCCAAGAAGTCTATGAATCCCAGTGGAAATCAAAGTTTGAGGCTGCTGGCATATGGTATGAACACCGTCTCATCGATGATATGGTGGCTTATGCACTTAAGAGTGAAGGAGGTTATGTCTGGGCGTGCAAGAACTATGATGGAGATGTTCAGAGTGACTTCTTAGCTCAAGGATTTGGATCTCTTGGGTTGATGACCTCTGTATTGGTTTGCCCTGATGGAAAGACAATTGAAGCAGAAGCTGCTCATGGTACTGTTACACGGCATTTTAGGGTTCATCAAAAAGGAGGTGAAACCAGCACAAACAGTATTGCATCCATTTTTGCTTGGTCTCGTGGCCTTGCTCACAGGGCAAAACTAGATGACAATGCTAGTCTCTTAGAGTTCACCGAGAAACTAGAATCGGCTTGTATTAATACTGTGGAATCTGGGAAGATGACCAAGGATCTTGCTCTTATCCTTCATGGTCCCAAGCTTTCTCGTGAGCACTATCTGAATACTGAAGAGTTCATTGATGCTGTAGCTGAGGAACTAAAATCCAGACTCCTTAAGGCATAG 1455 41.51 MAFQKIKVANPIVEMDEMSISVFFSLVVVSCLCSNGKSWETFPCFGHNVDQCSVSSPLDIMCYVEEYKFFVTVPLGLQKLGDLNVISFFSRDEMTRVIWESIKNKLIFPFLELDIKYFDLGLPHRDATDDKVTIESAEATLKYNVAIKCATITPDEARVKEFGLKQMWRSPNGTIRNILNGTVFREPILCKNVPRLVPGWTKPICIGRHAFGDQYRATDTVIKGPGKLKLVFEGQETQEIEVFNFTGAGGVALAMYNTDESIRSFAEASMNTAYEKKWPLYLSTKNTILKKYDGRFKDIFQEVYESQWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWSRGLAHRAKLDDNASLLEFTEKLESACINTVESGKMTKDLALILHGPKLSREHYLNTEEFIDAVAEELKSRLLKA 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10259894 10267683 + ClCG01G008610.2 Cla01g00846 264435

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00846 484 TIGRFAM nadp_idh_euk: isocitrate dehydrogenase, NADP-dependent 86 481 IPR004790 GO:0004450|GO:0006102
Cla01g00846 484 PANTHER NADP-SPECIFIC ISOCITRATE DEHYDROGENASE 1 484 IPR004790 GO:0004450|GO:0006102
Cla01g00846 484 PANTHER ISOCITRATE DEHYDROGENASE [NADP] 1 484 - -
Cla01g00846 484 SMART Iso_dh_2 85 473 IPR024084 -
Cla01g00846 484 PIRSF IDH_NADP 70 484 IPR004790 GO:0004450|GO:0006102
Cla01g00846 484 PIRSF IDH_NADP 1 27 IPR004790 GO:0004450|GO:0006102
Cla01g00846 484 Pfam Isocitrate/isopropylmalate dehydrogenase 92 473 IPR024084 -
Cla01g00846 484 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 87 481 - -
Cla01g00846 484 ProSitePatterns Isocitrate and isopropylmalate dehydrogenases signature. 344 363 IPR019818 GO:0000287|GO:0016616|GO:0051287
Cla01g00846 484 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 31 - -
Cla01g00846 484 Gene3D Isopropylmalate Dehydrogenase 82 484 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00846 K00031 IDH1, IDH2, icd; isocitrate dehydrogenase [EC:1.1.1.42] - csv:101211294 782.326
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00846 Cla-Chr1:10259894 Cla09g01869 Cla-Chr9:36398476 4.99E-136 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g717 . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00846 Cam01g0871 Cec01g0869 Cco01g0897 Clacu01g0860 Cmu01g0828 Cre09g1682 . . . . . . . . . . . . Bpe14g00063 . . Bma02g00562 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001183 3 5 3 4 3 2 4 2 2 1 2 2 2 2 2 4 2 2 3 2 2 2 2 2 2 2 2 3 5 3 77
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00846 Cla_Chr01 FPKM 4.406094 4.515925 8.425084 8.613239 7.806737 7.520891 7.184532 12.626949 12.188295 12.722644