Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00847 ATGGTTCTCTCCAAGACTGCTTCTCAGACCGATGTCTCCGTCCACTCCACCTTCGCTTCTCGATATGTGCGAACCTCTCTCCCGAGATTCAAAATGCCGGAAAATTCGATTCCCAAGGAGGCTGCGTTTCAGATCATTAATGATGAACTCATGCTCGATGGAAACCCTAGGTTGAATTTGGCCTCCTTCGTCACTACTTGGATGGAGCCTGAGTGTGATAAACTCATCATGGCCGCCATTAACAAGAATTACGTCGATATGGATGAATATCCTGTCACTACAGAGCTTCAGAACCGATGTGTGAACATGATAGCTCACTTGTTCAATGCCCCATTGGGTGATTCTGAGACGGCAGTGGGAGTGGGAACAGTGGGATCGTCAGAGGCCATAATGTTGGCTGGTTTGGCTTTCAAGAGAAAGTGGCAGAACAGAAGGAAGGCTGAAGGAAAGCCCTATGACAAGCCCAACATTGTCACTGGAGCTAACGTCCAGGTATGCTGGGAGAAATTTGCAAGGTACTTTGAGGTAGAACTGAAGGAGGTGAAATTGAGGGAAGGTTATTATGTGATGGATCCAGAGAAAGCTGTGGAGTTGGTTGATGAAAACACCATCTGTGTTGCAGCCATCTTGGGTTCCACTCTCAATGGAGAATTCGAAGATGTAAAGCTCTTGAATGATCTCTTGATCGAGAAGAACAAAGAAACTGGATGGGATACTCCTATTCATGTTGATGCTGCTAGTGGAGGGTTTATTGCCCCATTCATTTACCCTGAGCTAGAATGGGACTTTAGGCTGCCCCTTGTAAAGAGTATTAATGTAAGTGGCCACAAGTATGGGCTTGTTTATGCTGGAATTGGTTGGGTTATTTGGAGGAACAAAGAAGATTTGCCTGAAGAACTCATCTTCCATATCAACTATCTTGGAGCGGACCAACCCACTTTCACCCTCAATTTCTCCAAAGGATCTAGCCAAGTCATTGCTCAGTATTACCAATTGATCCGCTTGGGTTATGAGGGATACCAAAACGTGATGGAAAACTGCAAAGAAAACATGATCGTTCTAAAGGAAGGACTCGAAAGAACAGGGCGGTTCAACATCGTGTCGAAGGACAATGGAGTTCCACTTGTGGCCTTCTCCTTGAAAGACAACACACGCCATACAGAGTTTGAGGTCTCAGAAATGCTGAGGAGATTCGGGTGGATTGTACCAGCTTACACCATGCCTCCTGATGCACAACACATAACAGTCCTTAGAGTAGTGATCCGAGAAGACTTCTCTCGCACACTTGCTGAGCGTCTTGTGACGGATATTGAGAAAACGCTGCACGAGCTCGATAGCCTCCCGTCGAGGGCTGATATCAAAACGACGGTGGCCGGAGAAGAGACACAGAAGAACGACGTGGTGGTGGCGAAGAAGAGTGCGCTGGAGACACAGAGGGAGATCACAACTGTTTGGAGGAAGTTTGTGATGGAAAAGAAGAAGACTAATGGAGTTTGTTAG 1500 46.53 MVLSKTASQTDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSETAVGVGTVGSSEAIMLAGLAFKRKWQNRRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLREGYYVMDPEKAVELVDENTICVAAILGSTLNGEFEDVKLLNDLLIEKNKETGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYQNVMENCKENMIVLKEGLERTGRFNIVSKDNGVPLVAFSLKDNTRHTEFEVSEMLRRFGWIVPAYTMPPDAQHITVLRVVIREDFSRTLAERLVTDIEKTLHELDSLPSRADIKTTVAGEETQKNDVVVAKKSALETQREITTVWRKFVMEKKKTNGVC 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10324719 10334497 + ClCG01G008630.1 Cla01g00847 264436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00847 499 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cla01g00847 499 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Cla01g00847 499 Gene3D - 66 360 IPR015421 GO:0003824
Cla01g00847 499 Gene3D - 361 448 - -
Cla01g00847 499 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Cla01g00847 499 CDD DOPA_deC_like 59 439 - -
Cla01g00847 499 PANTHER GLUTAMATE DECARBOXYLASE 1 499 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cla01g00847 499 Gene3D - 1 65 - -
Cla01g00847 499 PANTHER GLUTAMATE DECARBOXYLASE 1 499 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00674 Cla-Chr1:8020791 Cla01g00847 Cla-Chr1:10324719 4.37E-38 dispersed
Cla01g00675 Cla-Chr1:8027748 Cla01g00847 Cla-Chr1:10324719 0 dispersed
Cla01g00847 Cla-Chr1:10324719 Cla04g01237 Cla-Chr4:27487052 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00847 K01580 - csv:101216119 994.571