Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00851 ATGGCGTGCCGGAATCTCCTCCGGCTGTGTTTTTCATCTTTGGTGTTCCTTGTTTTCATATTCTTTCCTGTAGGAGAAGCAGAGGCGGATCTTGCGTCGGACACGGCGGCGCTGGTGGCGCTTCAGAAGGCCATGGGTGTTTTGAGCCGGACTCGCTATTGGAACCTCTCCGACAAGACTCCATGTTTCTGGATTGGCGTTACTTGCGGCGGTGGGAGGGTTACTGAACTGCGGCTTCCCGGCGTTGGTCTCGTCGGCCAACTTCCTTTAGGGCTTGGAAATTTAACTCAACTTGAAACCCTGTCTCTTCGCTCTAACATGCTTTCAGGTTCTATTCCGTCTGATTTTGCAAACCTCCGCTCCCTCCGGAACCTCTACTTGCAATGGAACTCGTTTTCCGGCGAGATTCCTCCGGTTTTGTTCAGTATTCAGAGTCTTGTTCGCCTGAATTTGGCCCACAACAAGTTCGTCGGTCCGATTTCATTAGGTTTCAATAATCTCACGAACCTACAGGTTCTCAATTTGGAAGAGAATCAACTCGATGGAATTATTCCTGATTTGAACATTCCCTCGCTCAATGCTCTCAATGTTTCTTTCAATCGTCTCAATGGCTCTATCCCTTCGCGATTTTCCGATCAACCAGCCAATGCCTTCGACGGCAACTCGCTCTGCGGGAAGCCACTGAGCCCTTGCAACAGCGAGAAGAAGAAATTATCCGCTGGAGCAATCGCCGCAATCATTATCGGAAGTTTGATTGTATTCGTGCTCATCGTTCTGATTTTGATCTTTCTGTGCCGGAAGACGATCAAGATTAATCGGCCGAATGATGGTCAGACGATGGCGACAAGCTCCGGGAGATTGTCGTCGGAGGTTGAGAGTGCAGTTGGCGGAAATAGAGGAGGTGGGAATGAGAGGAATTTGGTGTTCTGTAGGAAAGGAGAAAGTGGGTTTGATTTGGAGGAACTGTTGAAAGCTTCTGCAGAGGTATTAGGGAAAGGAAGTTTTGGGTCAACTTACAAGGCAGCTCTGGATGTGGGGATAACTGTGGTGGTTAAGAGGTTGAGAGATGTCAAAGTTTCAGAGGAGGAATTCAAGGAGAAGATTGAAAGCTTGGGGATGATGAATCATCAGAACTTAGTTCCTATTAAGGGTTACTATTATGGCAGAGATGAGAAGCTTCTGCTCTGTGATTATGTCTCCATGGGAAGCTTATCTGTACATTTACATGGCAACAAAGATCCTAGTAGGACTTCATTGAAATGGGAAGCAAGGGTTGGCATTGCGCTTGCAGCTGCTCGGGGGATTACGTATCTACATTCTCGACGACCTCCGACCTCTCATGGCAACATAAAGTCTTCAAACATTCTCCTCAACAGATCCCATACAGCTTGTGTCTCTGACTTTGGTCTCATTCAGATTGCAAGTCCTACATCCACTCCAAACCATGTTGCAACCTACCGCGCCCCTGAAGTCACCGATCCTCGTAAAGTATCCCTGAAAGCAGATGTTTACAGTTTTGGTGTGGTAATTCTAGAGCTTCTAACAGGGAAGGCTCCGAACTCGGCAATGCTCAATGACGATGGCGTAGACCTCCCACGATGGGTGCACTCGAAGATCGAAGAGGAGAAGACTGCTGAAGTGTTCGATGAGGAGCTATTAGAATGCAAGAATGGCTTGGATGAAATGGTGCAACTTCTGCAACTTGCCATGTTATGTACAGCACCACACCCGGATAGTCGACCTACGATGGCGAAAGTGACGAGTCGAATCGATGAAATATATCATTCTATCTTACTGAAAGAACAAGATACGAGCATCGACAAGTTTTATGATGTGGACAGTACTGTTTCTCAGCAATTTTACTCAGCTGATTCAATCATGATTCCTCTTCCACCTTCGATCTAG 1905 47.14 MACRNLLRLCFSSLVFLVFIFFPVGEAEADLASDTAALVALQKAMGVLSRTRYWNLSDKTPCFWIGVTCGGGRVTELRLPGVGLVGQLPLGLGNLTQLETLSLRSNMLSGSIPSDFANLRSLRNLYLQWNSFSGEIPPVLFSIQSLVRLNLAHNKFVGPISLGFNNLTNLQVLNLEENQLDGIIPDLNIPSLNALNVSFNRLNGSIPSRFSDQPANAFDGNSLCGKPLSPCNSEKKKLSAGAIAAIIIGSLIVFVLIVLILIFLCRKTIKINRPNDGQTMATSSGRLSSEVESAVGGNRGGGNERNLVFCRKGESGFDLEELLKASAEVLGKGSFGSTYKAALDVGITVVVKRLRDVKVSEEEFKEKIESLGMMNHQNLVPIKGYYYGRDEKLLLCDYVSMGSLSVHLHGNKDPSRTSLKWEARVGIALAAARGITYLHSRRPPTSHGNIKSSNILLNRSHTACVSDFGLIQIASPTSTPNHVATYRAPEVTDPRKVSLKADVYSFGVVILELLTGKAPNSAMLNDDGVDLPRWVHSKIEEEKTAEVFDEELLECKNGLDEMVQLLQLAMLCTAPHPDSRPTMAKVTSRIDEIYHSILLKEQDTSIDKFYDVDSTVSQQFYSADSIMIPLPPSI 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10404260 10406646 - ClCG01G008670.1 Cla01g00851 264440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00851 634 Pfam Leucine rich repeat N-terminal domain 32 69 IPR013210 -
Cla01g00851 634 SMART LRR_typ_2 95 118 IPR003591 -
Cla01g00851 634 SMART LRR_typ_2 167 190 IPR003591 -
Cla01g00851 634 SMART LRR_typ_2 119 143 IPR003591 -
Cla01g00851 634 PANTHER OS05G0588300 PROTEIN 13 594 - -
Cla01g00851 634 SUPERFAMILY Protein kinase-like (PK-like) 328 588 IPR011009 -
Cla01g00851 634 Pfam Leucine rich repeat 93 131 IPR001611 GO:0005515
Cla01g00851 634 Gene3D Phosphorylase Kinase; domain 1 298 398 - -
Cla01g00851 634 SUPERFAMILY L domain-like 50 212 - -
Cla01g00851 634 Gene3D Ribonuclease Inhibitor 34 142 IPR032675 -
Cla01g00851 634 Gene3D Transferase(Phosphotransferase) domain 1 399 603 - -
Cla01g00851 634 ProSiteProfiles Protein kinase domain profile. 324 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00851 634 PANTHER LRR RECEPTOR-LIKE KINASE 13 594 - -
Cla01g00851 634 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Cla01g00851 634 Gene3D Ribonuclease Inhibitor 143 231 IPR032675 -
Cla01g00851 634 Pfam Protein tyrosine and serine/threonine kinase 328 589 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00851 Cla-Chr1:10404260 Cla05g01211 Cla-Chr5:13547561 0 dispersed
Cla01g00851 Cla-Chr1:10404260 Cla11g00245 Cla-Chr11:2868483 4.98E-155 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80252 PF07714 PK_Tyr_Ser-Thr 1.50E-35 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00851 - - csv:101206516 1017.68