Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00853 ATGGAGAACAACCAACCTGAGAATCAACATCCTCTTCACAAAACCACTAGCTTCAACGATGCCCCCAAATTGGATGCTGTTGCTGATGATGCCAATCTCGCCCCTCCTCTCCCTCCTCTTCTACAAACTGATGCTGCTCTAAAATCTTTGGAGGATCAGGATCAGAATAATCAGAATCAGCATCAGGATCAACCTCAGGATCAGGAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGGAGGAGGAGAAGAAGGAAGTGGAGGAGGAAGAGAACACCAAGGAAGGGGAGGAAAATACTGAGGTTGAACAATCCGACAACGAACCGGATCTTCATTACAATCTCCATACCATTCTTGAAGATGTCGATCAATTTCTCTCAACTCCTCACGGTTCTCGTGATCGAGAGGAAGATTCTGTTGTTCAAATTCCTCAGTTCATCGACAAATTCTTGGATCTCGTCGATGCCAAGATTGAGCAATACAATAACGACGAATCGAATGCGAAGGAGAAAGAGTGTAGAGTACCGGAGGATGAGTCCACGTTTCTCGAAGCCGTCGATCGGATATCCAAGCTGAAAACTGCAATTCACGAAATGAAATTGGAAGAGGATAAGAATTCGTTGATCAATCGCATCGGGAGCACTCAACAGCGAGCGATTTCTTATTTGGAAGAAGATTTCAGATTCTTTCTCGAGGAATCTAGAAACAGCGATTCCGATCCTGCTGCCGATACGAAAGGGAAACAGGAACAGGATCGTTCTGCATTACCGGACAATGAATCCGATCAGTTCCAGTTTCCAGGTTACTCCGACGAGATCGTGAACTATTTGAACAAAATCGCTAAGCAAATGATTTCCGGTGGATACGAATCGGAATGCTGCCAAGCCTACATGGTTGCGAGAAGAAACATATTCGAAGACGCCTTGCTGAAGCTCGGATTCGAGAAACACAGCATCGATGATATCCAGAAGATGAGTTGGGAATCAATGGAGAGGGAGATCGCGACATGGATTAGAACCATCAAGCAATGCGCCAGCATTTTATTCTCCGGCGAACGGAATCTCGTCGAATCTGTATTTTCATCGTATCCTCCAATGTCTGCCAGTCTGTTTAGCAATCTAACTCGCGGCATTATGATTCAACTCCTAAATTTCTCAGAAGGTGTAGCAATGACGAAACGCTCCGCCGAGAAATTGTTCAAGCTTCTTGATATGTACGAAGCTCTTCGTGACATGGTCCCAAAAATGGAAGTATTATTTCCAGAAGAATCCGCTAACGAGCTCAAAACAGAAACCACAACCGCTCGAACTCGTCTAGGCGAAGCGGCGATTTGCATATTTTGCGATCTCGAGAACTCAATCAAAGCAGACACCGGAAAAACTCCGGTACCAGGCGGCGCCGTTCATCCATTAACTCGATACACCATAAACTACTTGAAATACGCTTGCGAGTACAGAAACACACTGGAACAGATTTTCAAAGAGCATTCAAAGATCGAACGAGCCGATTCAACAAGTCGACCACATTTCGAAGGCGAACAAGCACCACAATACAACTCTAGCATTGACAATCAATCCCCATTCGCGGTTGAACTGACGCGAGTAATGGAGCTCCTGGACTCAAATCTGGAAGCAAAATCAAAGCTATACAGAGATATAGCACTGAGTTCGATTTTCATGATGAACAACGGACGATACATCTTGCAGAAGATCAAAGGATCTGCAGATATCCATGAACTAGTAGGCGATACGTGGTACAGGAAGAGATCTTCGGATTTGCGTCAGTATCACAAGAATTACCAGAGAGAAACGTGGGGGAAGTTGTTAGGTTGTTTGAACCACGAAGGATTAACAGTGCACGGGAAAGTGGTAAAGCCAGTGCTGAAGGAGAGGTTTAAAGGATTCAACGCGCTGTTCGAAGAGATTCATAAAACACAGAGCTCGTGGATCATAAGCGACGAGCAACTTCAATCGGAGCTGCGAGTATCGATATCGGCGGTGATGATTCCGGCGTACAGATCATTCTTAGGGAGGTTTTCGCAGGTTTTGGATCCGGGGAGACAAACAGAGAAATATATAAAGTTTCAGCCTGAAGATATAGAGACATACATAGATGATCTATTTGATGGAAATCCAAGCTCCATGGCAAGAAGGAGAACATAA 2175 44.97 MENNQPENQHPLHKTTSFNDAPKLDAVADDANLAPPLPPLLQTDAALKSLEDQDQNNQNQHQDQPQDQEEKEKEKEKEKEKEKEEEEKKEVEEEENTKEGEENTEVEQSDNEPDLHYNLHTILEDVDQFLSTPHGSRDREEDSVVQIPQFIDKFLDLVDAKIEQYNNDESNAKEKECRVPEDESTFLEAVDRISKLKTAIHEMKLEEDKNSLINRIGSTQQRAISYLEEDFRFFLEESRNSDSDPAADTKGKQEQDRSALPDNESDQFQFPGYSDEIVNYLNKIAKQMISGGYESECCQAYMVARRNIFEDALLKLGFEKHSIDDIQKMSWESMEREIATWIRTIKQCASILFSGERNLVESVFSSYPPMSASLFSNLTRGIMIQLLNFSEGVAMTKRSAEKLFKLLDMYEALRDMVPKMEVLFPEESANELKTETTTARTRLGEAAICIFCDLENSIKADTGKTPVPGGAVHPLTRYTINYLKYACEYRNTLEQIFKEHSKIERADSTSRPHFEGEQAPQYNSSIDNQSPFAVELTRVMELLDSNLEAKSKLYRDIALSSIFMMNNGRYILQKIKGSADIHELVGDTWYRKRSSDLRQYHKNYQRETWGKLLGCLNHEGLTVHGKVVKPVLKERFKGFNALFEEIHKTQSSWIISDEQLQSELRVSISAVMIPAYRSFLGRFSQVLDPGRQTEKYIKFQPEDIETYIDDLFDGNPSSMARRRT 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10433236 10435410 - ClCG01G008690.1 Cla01g00853 264442

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00853 724 Coils Coil 66 104 - -
Cla01g00853 724 MobiDBLite consensus disorder prediction 1 16 - -
Cla01g00853 724 MobiDBLite consensus disorder prediction 87 108 - -
Cla01g00853 724 SUPERFAMILY Cullin repeat-like 181 713 IPR016159 -
Cla01g00853 724 MobiDBLite consensus disorder prediction 238 269 - -
Cla01g00853 724 Pfam Exo70 exocyst complex subunit 340 710 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cla01g00853 724 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 109 723 - -
Cla01g00853 724 Coils Coil 155 175 - -
Cla01g00853 724 PANTHER EXOCYST COMPLEX PROTEIN EXO70 109 723 IPR004140 GO:0000145|GO:0006887
Cla01g00853 724 Gene3D Exocyst complex component Exo70 161 722 - -
Cla01g00853 724 MobiDBLite consensus disorder prediction 1 120 - -
Cla01g00853 724 MobiDBLite consensus disorder prediction 48 63 - -
Cla01g00853 724 MobiDBLite consensus disorder prediction 238 261 - -
Cla01g00853 724 MobiDBLite consensus disorder prediction 64 86 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00853 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101206040 1165.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00853 Cla-Chr1:10433236 Cla07g01455 Cla-Chr7:31816529 0 dispersed
Cla01g00853 Cla-Chr1:10433236 Cla07g01376 Cla-Chr7:30912560 3.63E-115 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla05g02225 . 12 670 EXO70 exocyst subunit family AT5G03540 74.5 2.4e-283 971.5
Cla01g01477 . 1 624 EXO70 exocyst subunit family AT5G03540 68.8 1.3e-244 842.8
Cla01g01477 . 1 624 EXO70 exocyst subunit family AT5G52340 76.9 1.3e-273 939.1
Cla05g02225 . 14 670 EXO70 exocyst subunit family AT5G52340 72.8 1.1e-269 926.0
Cla05g02225 . 166 670 EXO70 exocyst subunit family AT5G52350 59.5 8.1e-166 580.9
Cla01g01477 . 169 624 EXO70 exocyst subunit family AT5G52350 63.0 8.7e-160 560.8
Cla03g00043 . 1 623 EXO70 exocyst subunit family AT5G58430 66.9 3.8e-246 847.8
Cla03g00043 . 1 622 EXO70 exocyst subunit family AT1G07000 52.4 1.1e-173 607.1
Cla07g01455 . 60 673 EXO70 exocyst subunit family AT5G13150 53.5 4.8e-175 611.7
Cla01g00853 . 113 724 EXO70 exocyst subunit family AT5G13990 54.5 6.2e-189 657.9
Cla07g01376 . 9 609 EXO70 exocyst subunit family AT1G72470 65.2 4.9e-217 751.1
Cla07g01376 . 9 607 EXO70 exocyst subunit family AT1G54090 62.0 1.4e-208 723.0
Cla07g01376 . 9 608 EXO70 exocyst subunit family AT3G14090 64.4 8.8e-219 756.9
Cla03g01298 . 27 664 EXO70 exocyst subunit family AT5G50380 61.4 1.2e-224 776.5
Cla03g00352 . 18 613 EXO70 exocyst subunit family AT5G50380 61.3 3.8e-207 718.4
Cla08g01259 . 11 682 EXO70 exocyst subunit family AT4G31540 73.6 1.4e-294 1008.8
Cla10g01975 . 35 630 EXO70 exocyst subunit family AT3G09520 55.9 2.0e-178 622.9
Cla10g01978 . 35 630 EXO70 exocyst subunit family AT3G09520 55.9 2.0e-178 622.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011360 0 1 0 0 0 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 2 1 0 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00853 Cla_Chr01 FPKM 4.2 3.780524 5.310232 4.620173 6.067814 6.188028 5.630261 6.590916 7.317007 6.832712