Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00888 AGAGAGAGAGAGAGAGAGAGAAGTGTCCAATTGTGGATCAAAATTCCTATTGTTTACAAAAGGGAAGAGAGAGAGAGAGAGAGAGAGAGGGTGGTGGGACGCACGTGTCGGAGGATGAAGACGGAGAATGGAAGGAAACAAGGGGGAGGAACAGGAGCAGCGCCATGTGCAGCATGCAAGCTGCTGAGAAGAAGGTGTGGAGAGGAATGTGTATTTGCTCCATACTTTCCAGCAGACCAACCTCATAAGTTTGCCAATGTTCATAAGGTTTTTGGTGCTAGCAATGTCAACAAAATGCTCCAGGAGTTGCCAATTCACCAACGTGGAGATGCAGTGAGCAGTTTGGTGTATGAAGCAAATGCTCGAGTGCGCGACCCGGTGTACGGGTGCGTCGGAGCAATATCATCTCTGCAGCAGCAGATAGACGCCCTCCAAACTCAGCTGGCTTTGGCTCAAGCCGAGGTGGTGCACCTAAGGGTGCGTCAGACAGCACCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAAGTAATAGTGGGTCACCCTCATCAAGGCTCATGGGCTCACAATCCAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAAGCCATGGGAGACTCAATG 627 50.56 RERERERSVQLWIKIPIVYKREERERERERVVGRTCRRMKTENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVRQTAPFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGDSM 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11254759 11258393 + ClCG01G009020.1 Cla01g00888 264477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00888 209 MobiDBLite consensus disorder prediction 167 192 - -
Cla01g00888 209 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 51 198 - -
Cla01g00888 209 ProSiteProfiles LOB domain profile. 54 155 IPR004883 -
Cla01g00888 209 MobiDBLite consensus disorder prediction 167 190 - -
Cla01g00888 209 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 51 198 - -
Cla01g00888 209 Coils Coil 134 161 - -
Cla01g00888 209 Pfam Lateral organ boundaries (LOB) domain 55 152 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00888 Cla-Chr1:11254759 Cla09g02200 Cla-Chr9:39611639 1.59E-62 dispersed
Cla08g01214 Cla-Chr8:25046183 Cla01g00888 Cla-Chr1:11254759 1.06E-23 dispersed
Cla01g00888 Cla-Chr1:11254759 Cla02g01814 Cla-Chr2:33227293 3.76E-77 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60400 PF03195 LOB 4.20E-43 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00888 - - csv:101202930 284.263