Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla01g00916 | ATGGTTGCTTTCTCATATTCATCACCTCATTCCAATGGAGATCCAAAGGCAATAGAAAAGATTAAGAACCAAAAGACAATAATTTATCCCAATGGTTTCAACATCACATGGGGCAACGACAACCGTTATTGGCGCTTACCTCGTCAATCTCGTAACTTGAAGGAGTCGAGTGCAGCAGCAGAGTTACTACAAGTGTCATGGTTCGAGGTGACATGTTCAACAGACAATGTGGATGTCGGAAAAAGCTACAGAGTTGGGTTCAACCTATCCATGACAGTCGCAGCTTTTGGCTGGAAAGGATGTGAAGTTTACATAATGGCCAAGATTGGGAAGGCAGGGAAATTTGTGTACAAGAAGGTGTGTCTTGACACTCGATGCTCTGATCAGAACAAGTTCAATATGCCGGAAGATGATCTAATTATCACCGTGAACCCTCCGCCGAGCTCACCGGGAGACAACCGTCTCTACTTTGGAATGTACGAGGTTTGGAGTGGGAGATGGAAGGGAGGACTCAAAATCCACCATGCATTTGTCGAGAAGGTTGGAAACTAG | 552 | 44.93 | MVAFSYSSPHSNGDPKAIEKIKNQKTIIYPNGFNITWGNDNRYWRLPRQSRNLKESSAAAELLQVSWFEVTCSTDNVDVGKSYRVGFNLSMTVAAFGWKGCEVYIMAKIGKAGKFVYKKVCLDTRCSDQNKFNMPEDDLIITVNPPPSSPGDNRLYFGMYEVWSGRWKGGLKIHHAFVEKVGN | 183 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 12360817 | 12362057 | - | ClCG01G009260.1 | Cla01g00916 | 264505 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla01g00916 | 183 | Pfam | Phloem protein 2 | 26 | 176 | IPR025886 | - | |
| Cla01g00916 | 183 | PANTHER | PROTEIN PHLOEM PROTEIN 2-LIKE A9 | 11 | 178 | - | - | |
| Cla01g00916 | 183 | PANTHER | - | 11 | 178 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla01g00916 | Cla-Chr1:12360817 | Cla01g00922 | Cla-Chr1:12760513 | 2.57E-56 | dispersed | |
| Cla01g00916 | Cla-Chr1:12360817 | Cla01g00918 | Cla-Chr1:12479644 | 2.43E-111 | proximal | |
| Cla01g00915 | Cla-Chr1:12308249 | Cla01g00916 | Cla-Chr1:12360817 | 6.41E-83 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla01g00916 | - | - | csv:101206538 | 333.183 |